[HTML][HTML] Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
Understanding the genetic regulatory code governing gene expression is an important
challenge in molecular biology. However, how individual coding and non-coding regions of …
challenge in molecular biology. However, how individual coding and non-coding regions of …
[HTML][HTML] Learning the regulatory code of gene expression
Data-driven machine learning is the method of choice for predicting molecular phenotypes
from nucleotide sequence, modeling gene expression events including protein-DNA …
from nucleotide sequence, modeling gene expression events including protein-DNA …
Performance of regression models as a function of experiment noise
Background: A challenge in developing machine learning regression models is that it is
difficult to know whether maximal performance has been reached on the test dataset, or …
difficult to know whether maximal performance has been reached on the test dataset, or …
[HTML][HTML] DNA structure at the plasmid origin-of-transfer indicates its potential transfer range
Horizontal gene transfer via plasmid conjugation enables antimicrobial resistance (AMR) to
spread among bacteria and is a major health concern. The range of potential transfer hosts …
spread among bacteria and is a major health concern. The range of potential transfer hosts …
Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens
J Zrimec - MicrobiologyOpen, 2020 - Wiley Online Library
Antimicrobial resistance poses a great danger to humanity, in part due to the widespread
horizontal gene transfer of plasmids via conjugation. Modeling of plasmid transfer is …
horizontal gene transfer of plasmids via conjugation. Modeling of plasmid transfer is …
Evaluating hydrogen bonds and base stacking of single, tandem and terminal GU mismatches in RNA with a mesoscopic model
TD Amarante, G Weber - Journal of Chemical Information and …, 2016 - ACS Publications
Guanine− Uracil (GU) mismatches are crucial to the stability of the RNA double helix and
need to be considered in RNA folding algorithms for numerous biotechnological …
need to be considered in RNA folding algorithms for numerous biotechnological …
Machine Learning Model using a Fiber Bragg Grating-based Sensor System to measure Battery State-of-Charge
S Bandyopadhyay, M Fabian, J Bremner, X Liu… - Optical Fiber …, 2022 - opg.optica.org
Conference title, upper and lower case, bolded, 18 point type, centered Page 1 Machine
Learning Model using a Fiber Bragg Gratingbased Sensor System to measure Battery State-of-Charge …
Learning Model using a Fiber Bragg Gratingbased Sensor System to measure Battery State-of-Charge …
Structural representations of DNA regulatory substrates can enhance sequence-based algorithms by associating functional sequence variants
J Zrimec - Proceedings of the 11th ACM International Conference …, 2020 - dl.acm.org
The nucleotide sequence representation of DNA can be inadequate for resolving protein-
DNA binding sites and regulatory substrates, such as those involved in gene expression and …
DNA binding sites and regulatory substrates, such as those involved in gene expression and …
Gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
Understanding the genetic regulatory code that governs gene expression is a primary, yet
challenging aspiration in molecular biology that opens up possibilities to cure human …
challenging aspiration in molecular biology that opens up possibilities to cure human …
[HTML][HTML] Bridge-Induced Translocation between NUP145 and TOP2 Yeast Genes Models the Genetic Fusion between the Human Orthologs Associated With Acute …
In mammalian organisms liquid tumors such as acute myeloid leukemia (AML) are related to
spontaneous chromosomal translocations ensuing in gene fusions. We previously …
spontaneous chromosomal translocations ensuing in gene fusions. We previously …