Fungal identification using molecular tools: a primer for the natural products research community

HA Raja, AN Miller, CJ Pearce… - Journal of natural …, 2017 - ACS Publications
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …

Whole-genome sequencing of bacterial pathogens: the future of nosocomial outbreak analysis

S Quainoo, JPM Coolen, SAFT van Hijum… - Clinical microbiology …, 2017 - Am Soc Microbiol
Outbreaks of multidrug-resistant bacteria present a frequent threat to vulnerable patient
populations in hospitals around the world. Intensive care unit (ICU) patients are particularly …

RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language

S Höhna, MJ Landis, TA Heath, B Boussau… - Systematic …, 2016 - academic.oup.com
Programs for Bayesian inference of phylogeny currently implement a unique and fixed suite
of models. Consequently, users of these software packages are simultaneously forced to …

SARS-CoV-2 and COVID-19: A genetic, epidemiological, and evolutionary perspective

M Sironi, SE Hasnain, B Rosenthal, T Phan… - Infection, genetics and …, 2020 - Elsevier
In less than five months, COVID-19 has spread from a small focus in Wuhan, China, to more
than 5 million people in almost every country in the world, dominating the concern of most …

TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses

BC Stöver, KF Müller - BMC bioinformatics, 2010 - Springer
Background Today it is common to apply multiple potentially conflicting data sources to a
given phylogenetic problem. At the same time, several different inference techniques are …

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary

K Vanneste, G Baele, S Maere… - Genome research, 2014 - genome.cshlp.org
Ancient whole-genome duplications (WGDs), also referred to as paleopolyploidizations,
have been reported in most evolutionary lineages. Their attributed role remains a major …

Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests

D Posada, TR Buckley - Systematic biology, 2004 - academic.oup.com
Abstract Model selection is a topic of special relevance in molecular phylogenetics that
affects many, if not all, stages of phylogenetic inference. Here we discuss some fundamental …

Identification of birds through DNA barcodes

PDN Hebert, MY Stoeckle, TS Zemlak, CM Francis - PLoS biology, 2004 - journals.plos.org
Short DNA sequences from a standardized region of the genome provide a DNA barcode for
identifying species. Compiling a public library of DNA barcodes linked to named specimens …

Bayesian phylogenetic analysis of combined data

JAA Nylander, F Ronquist, JP Huelsenbeck… - Systematic …, 2004 - academic.oup.com
The recent development of Bayesian phylogenetic inference using Markov chain Monte
Carlo (MCMC) techniques has facilitated the exploration of parameter-rich evolutionary …

[图书][B] Phylogenetics: theory and practice of phylogenetic systematics

EO Wiley, BS Lieberman - 2011 - books.google.com
The long-awaited revision of the industry standard on phylogenetics Since the publication of
the first edition of this landmark volume more than twenty-five years ago, phylogenetic …