[HTML][HTML] Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human …

YG Tak, PJ Farnham - Epigenetics & chromatin, 2015 - Springer
Considerable progress towards an understanding of complex diseases has been made in
recent years due to the development of high-throughput genotyping technologies. Using …

Recent progress in CRISPR/Cas9 technology

Y Mei, Y Wang, H Chen, ZS Sun, XD Ju - Journal of Genetics and …, 2016 - Elsevier
The clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 system, a
simple and efficient tool for genome editing, has experienced rapid progress in its …

Programmable deletion, replacement, integration and inversion of large DNA sequences with twin prime editing

AV Anzalone, XD Gao, CJ Podracky, AT Nelson… - Nature …, 2022 - nature.com
The targeted deletion, replacement, integration or inversion of genomic sequences could be
used to study or treat human genetic diseases, but existing methods typically require double …

[HTML][HTML] CRISPR inversion of CTCF sites alters genome topology and enhancer/promoter function

Y Guo, Q Xu, D Canzio, J Shou, J Li, DU Gorkin, I Jung… - Cell, 2015 - cell.com
CTCF and the associated cohesin complex play a central role in insulator function and
higher-order chromatin organization of mammalian genomes. Recent studies identified a …

[HTML][HTML] CRISPR/Cas9 targeting events cause complex deletions and insertions at 17 sites in the mouse genome

HY Shin, C Wang, HK Lee, KH Yoo, X Zeng… - Nature …, 2017 - nature.com
Although CRISPR/Cas9 genome editing has provided numerous opportunities to interrogate
the functional significance of any given genomic site, there is a paucity of data on the extent …

A donor-DNA-free CRISPR/Cas-based approach to gene knock-up in rice

Y Lu, J Wang, B Chen, S Mo, L Lian, Y Luo, D Ding… - Nature plants, 2021 - nature.com
Structural variations (SVs), such as inversion and duplication, contribute to important
agronomic traits in crops. Pan-genome studies revealed that SVs were a crucial and …

[HTML][HTML] In vivo CRISPR/Cas9 targeting of fusion oncogenes for selective elimination of cancer cells

M Martinez-Lage, R Torres-Ruiz, P Puig-Serra… - Nature …, 2020 - nature.com
Fusion oncogenes (FOs) are common in many cancer types and are powerful drivers of
tumor development. Because their expression is exclusive to cancer cells and their …

[HTML][HTML] Selection of highly efficient sgRNAs for CRISPR/Cas9-based plant genome editing

G Liang, H Zhang, D Lou, D Yu - Scientific reports, 2016 - nature.com
Abstract The CRISPR/Cas9-sgRNA system has been developed to mediate genome editing
and become a powerful tool for biological research. Employing the CRISPR/Cas9-sgRNA …

[HTML][HTML] Precise and predictable CRISPR chromosomal rearrangements reveal principles of Cas9-mediated nucleotide insertion

J Shou, J Li, Y Liu, Q Wu - Molecular cell, 2018 - cell.com
Chromosomal rearrangements including large DNA-fragment inversions, deletions, and
duplications by Cas9 with paired sgRNAs are important to investigate genome structural …

CRISPR/Cas9 cleavages in budding yeast reveal templated insertions and strand-specific insertion/deletion profiles

BR Lemos, AC Kaplan, JE Bae… - Proceedings of the …, 2018 - National Acad Sciences
Harnessing CRISPR-Cas9 technology provides an unprecedented ability to modify genomic
loci via DNA double-strand break (DSB) induction and repair. We analyzed nonhomologous …