A non-parametric approach to estimate multiplicity of infection and pathogen haplotype frequencies

L Kayanula, KA Schneider - Frontiers in Malaria, 2024 - frontiersin.org
Introduction The presence of multiple genetically distinct variants (lineages) within an
infection (multiplicity of infection, MOI) is common in infectious diseases such as malaria …

Estimating multiplicity of infection, allele frequencies, and prevalences accounting for incomplete data

M Hashemi, KA Schneider - Plos one, 2024 - journals.plos.org
Background Molecular surveillance of infectious diseases allows the monitoring of
pathogens beyond the granularity of traditional epidemiological approaches and is well …

Estimating multiplicity of infection, haplotype frequencies, and linkage disequilibria from multi-allelic markers for molecular disease surveillance

HCJ Tsoungui Obama, KA Schneider - bioRxiv, 2023 - biorxiv.org
Molecular/genetic methods are becoming increasingly important for surveillance of diseases
like malaria. Such methods allow to monitor routes of disease transmission or the origin and …