Tumor neoantigens: building a framework for personalized cancer immunotherapy

MM Gubin, MN Artyomov, ER Mardis… - The Journal of …, 2015 - Am Soc Clin Investig
It is now well established that the immune system can recognize developing cancers and
that therapeutic manipulation of immunity can induce tumor regression. The capacity to …

Peptide vaccine: progress and challenges

W Li, MD Joshi, S Singhania, KH Ramsey, AK Murthy - Vaccines, 2014 - mdpi.com
Conventional vaccine strategies have been highly efficacious for several decades in
reducing mortality and morbidity due to infectious diseases. The bane of conventional …

Improved methods for predicting peptide binding affinity to MHC class II molecules

KK Jensen, M Andreatta, P Marcatili, S Buus… - …, 2018 - Wiley Online Library
Major histocompatibility complex class II (MHC‐II) molecules are expressed on the surface
of professional antigen‐presenting cells where they display peptides to T helper cells, which …

The antimicrobial peptide LL37 is a T-cell autoantigen in psoriasis

R Lande, E Botti, C Jandus, D Dojcinovic… - Nature …, 2014 - nature.com
Psoriasis is a common T-cell-mediated skin disease with 2–3% prevalence worldwide.
Psoriasis is considered to be an autoimmune disease, but the precise nature of the …

[HTML][HTML] An overview of bioinformatics tools for epitope prediction: implications on vaccine development

RE Soria-Guerra, R Nieto-Gomez… - Journal of biomedical …, 2015 - Elsevier
Exploitation of recombinant DNA and sequencing technologies has led to a new concept in
vaccination in which isolated epitopes, capable of stimulating a specific immune response …

T cell epitope predictions

B Peters, M Nielsen, A Sette - Annual Review of Immunology, 2020 - annualreviews.org
Throughout the body, T cells monitor MHC-bound ligands expressed on the surface of
essentially all cell types. MHC ligands that trigger a T cell immune response are referred to …

Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia

M Rajasagi, SA Shukla, EF Fritsch… - Blood, The Journal …, 2014 - ashpublications.org
Genome sequencing has revealed a large number of shared and personal somatic
mutations across human cancers. In principle, any genetic alteration affecting a protein …

Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system

N Rapin, O Lund, M Bernaschi, F Castiglione - PloS one, 2010 - journals.plos.org
We present a new approach to the study of the immune system that combines techniques of
systems biology with information provided by data-driven prediction methods. To this end …

Peptide binding predictions for HLA DR, DP and DQ molecules

P Wang, J Sidney, Y Kim, A Sette, O Lund, M Nielsen… - BMC …, 2010 - Springer
Background MHC class II binding predictions are widely used to identify epitope candidates
in infectious agents, allergens, cancer and autoantigens. The vast majority of prediction …

Reverse vaccinology: developing vaccines in the era of genomics

A Sette, R Rappuoli - Immunity, 2010 - cell.com
The sequence of microbial genomes made all potential antigens of each pathogen available
for vaccine development. This increased by orders of magnitude potential vaccine targets in …