Knowledge-guided deep learning models of drug toxicity improve interpretation

Y Hao, JD Romano, JH Moore - Patterns, 2022 - cell.com
In drug development, a major reason for attrition is the lack of understanding of cellular
mechanisms governing drug toxicity. The black-box nature of conventional classification …

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

G Xiang, CA Keller, E Heuston, BM Giardine… - Genome …, 2020 - genome.cshlp.org
Thousands of epigenomic data sets have been generated in the past decade, but it is
difficult for researchers to effectively use all the data relevant to their projects. Systematic …

[PDF][PDF] KNOWLEDGE-GUIDED DEEP LEARNING MODELS OF DRUG TOXICITY IMPROVE INTERPRETATION Yun Hao A DISSERTATION in

L Shen - 2022 - repository.upenn.edu
Yun Hao Li Shen Jason H. Moore In drug development, a major reason for attrition is the
lack of understanding of cellular mechanisms governing drug toxicity. Conventional models …

[PDF][PDF] Identifying hidden drivers of heterogeneous inflammatory diseases

N Garzorz-Stark, R Batra, F Lauffer, M Jargosch, C Pilz… - bioRxiv, 2020 - biorxiv.org
Chronic inflammatory diseases of the cardiovascular system, brain, gut, joints, skin and lung
are characterized by complex interactions between genetic predisposition and tissuespecific …

Functional Gene Networks and Their Applications

HD Li, Y Guan - Networks in Systems Biology: Applications for Disease …, 2020 - Springer
One essential goal in functional genomics is to understand the functions and functional
interactions of genes. The functional interaction between genes can happen in many ways …

Computational Tools for Normalization, Integration, and Gene Regulatory Inference of Multi-DimensionalEpigenomic and Transcriptomic Data

G Xiang - 2020 - search.proquest.com
Epigenetic modifications are intimately associated with many aspects of transcriptional
regulation, and thus, many epigenetic data sets have been generated under diverse …

Olga Troyanskaya

V Marx - Nature Methods, 2018 - nature.com
“My goal is to solve biological problems,” says Olga Troyanskaya, who is on the Princeton
University faculty in computer science and at the Lewis-Sigler Institute for Integrative …