Determinants of enhancer and promoter activities of regulatory elements

R Andersson, A Sandelin - Nature Reviews Genetics, 2020 - nature.com
The proper activities of enhancers and gene promoters are essential for coordinated
transcription within a cell. Although diverse methodologies have been developed to identify …

NF-κB signaling in macrophages: dynamics, crosstalk, and signal integration

MG Dorrington, IDC Fraser - Frontiers in immunology, 2019 - frontiersin.org
The nuclear factor-κB (NF-κB) signaling pathway is one of the best understood immune-
related pathways thanks to almost four decades of intense research. NF-κB signaling is …

Activating an adaptive immune response from a hydrogel scaffold imparts regenerative wound healing

DR Griffin, MM Archang, CH Kuan, WM Weaver… - Nature materials, 2021 - nature.com
Microporous annealed particle (MAP) scaffolds are flowable, in situ crosslinked,
microporous scaffolds composed of microgel building blocks and were previously shown to …

Innate and adaptive immune memory: an evolutionary continuum in the host's response to pathogens

MG Netea, A Schlitzer, K Placek, LAB Joosten… - Cell host & …, 2019 - cell.com
Immunological memory is an important evolutionary trait that improves host survival upon
reinfection. Memory is a characteristic recognized within both the innate and adaptive arms …

Toll-like receptor signaling rewires macrophage metabolism and promotes histone acetylation via ATP-citrate lyase

MA Lauterbach, JE Hanke, M Serefidou, MSJ Mangan… - Immunity, 2019 - cell.com
Toll-like receptor (TLR) activation induces inflammatory responses in macrophages by
activating temporally defined transcriptional cascades. Whether concurrent changes in the …

Trained immunity: a program of innate immune memory in health and disease

MG Netea, LAB Joosten, E Latz, KHG Mills, G Natoli… - Science, 2016 - science.org
BACKGROUND Host immune responses are classically divided into innate immune
responses, which react rapidly and nonspecifically upon encountering a pathogen, and …

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

SJ Clark, R Argelaguet, CA Kapourani… - Nature …, 2018 - nature.com
Parallel single-cell sequencing protocols represent powerful methods for investigating
regulatory relationships, including epigenome-transcriptome interactions. Here, we report a …

Signaling via the NFκB system

S Mitchell, J Vargas, A Hoffmann - … Reviews: Systems Biology …, 2016 - Wiley Online Library
The nuclear factor kappa B (NFκB) family of transcription factors is a key regulator of immune
development, immune responses, inflammation, and cancer. The NFκB signaling system …

Epigenetic regulation of macrophages: from homeostasis maintenance to host defense

S Chen, J Yang, Y Wei, X Wei - Cellular & molecular immunology, 2020 - nature.com
Macrophages are crucial members of the innate immune response and important regulators.
The differentiation and activation of macrophages require the timely regulation of gene …

Epigenetic regulation of the innate immune response to infection

Q Zhang, X Cao - Nature Reviews Immunology, 2019 - nature.com
Innate immune cells have complex signalling pathways for sensing pathogens and initiating
innate immune responses against infection. These pathways are tightly regulated at different …