Limit cycles in mass-conserving deficiency-one mass-action systems
B Boros, J Hofbauer - arXiv preprint arXiv:2202.10406, 2022 - arxiv.org
We present some simple mass-action systems with limit cycles that fall under the scope of
the Deficiency-One Theorem. All the constructed examples are mass-conserving and their …
the Deficiency-One Theorem. All the constructed examples are mass-conserving and their …
Realizations of kinetic differential equations
The induced kinetic differential equation of a reaction network endowed with mass action
type kinetics is a system of polynomial differential equations. The problem studied here is …
type kinetics is a system of polynomial differential equations. The problem studied here is …
An algorithm for finding weakly reversible deficiency zero realizations of polynomial dynamical systems
Systems of differential equations with polynomial right-hand sides are very common in
applications. On the other hand, their mathematical analysis is very challenging in general …
applications. On the other hand, their mathematical analysis is very challenging in general …
Weakly reversible single linkage class realizations of polynomial dynamical systems: an algorithmic perspective
Abstract Systems of differential equations with polynomial right-hand sides are very common
in applications. In particular, when restricted to the positive orthant, they appear naturally …
in applications. In particular, when restricted to the positive orthant, they appear naturally …
Endotactic networks and toric differential inclusions
G Craciun, A Deshpande - SIAM Journal on Applied Dynamical Systems, 2020 - SIAM
An important dynamical property of biological interaction networks is persistence, which
intuitively means that “no species goes extinct." It has been conjectured that dynamical …
intuitively means that “no species goes extinct." It has been conjectured that dynamical …
[HTML][HTML] Some minimal bimolecular mass-action systems with limit cycles
B Boros, J Hofbauer - Nonlinear Analysis: Real World Applications, 2023 - Elsevier
We discuss three examples of bimolecular mass-action systems with three species, due to
Feinberg, Berner, Heinrich, and Wilhelm. Each system has a unique positive equilibrium …
Feinberg, Berner, Heinrich, and Wilhelm. Each system has a unique positive equilibrium …
The disguised toric locus and affine equivalence of reaction networks
Under the assumption of mass-action kinetics, a dynamical system may be induced by
several different reaction networks and/or parameters. It is therefore possible for a mass …
several different reaction networks and/or parameters. It is therefore possible for a mass …
A Lower Bound on the Dimension of the -Disguised Toric Locus of a Reaction Network
Polynomial dynamical systems (ie, dynamical systems with polynomial right-hand side) are
ubiquitous in applications, especially as models of reaction networks and interaction …
ubiquitous in applications, especially as models of reaction networks and interaction …
Weakly reversible mass-action systems with infinitely many positive steady states
We show that weakly reversible mass-action systems can have a continuum of positive
steady states, coming from the zeroes of a multivariate polynomial. Moreover, the same is …
steady states, coming from the zeroes of a multivariate polynomial. Moreover, the same is …
The Dimension of the Disguised Toric Locus of a Reaction Network
Under mass-action kinetics, complex-balanced systems emerge from biochemical reaction
networks and exhibit stable and predictable dynamics. For a reaction network $ G $, the …
networks and exhibit stable and predictable dynamics. For a reaction network $ G $, the …