Limit cycles in mass-conserving deficiency-one mass-action systems

B Boros, J Hofbauer - arXiv preprint arXiv:2202.10406, 2022 - arxiv.org
We present some simple mass-action systems with limit cycles that fall under the scope of
the Deficiency-One Theorem. All the constructed examples are mass-conserving and their …

Realizations of kinetic differential equations

G Craciun, MD Johnston, G Szederkényi… - arXiv preprint arXiv …, 2019 - arxiv.org
The induced kinetic differential equation of a reaction network endowed with mass action
type kinetics is a system of polynomial differential equations. The problem studied here is …

An algorithm for finding weakly reversible deficiency zero realizations of polynomial dynamical systems

G Craciun, J Jin, PY Yu - SIAM Journal on Applied Mathematics, 2023 - SIAM
Systems of differential equations with polynomial right-hand sides are very common in
applications. On the other hand, their mathematical analysis is very challenging in general …

Weakly reversible single linkage class realizations of polynomial dynamical systems: an algorithmic perspective

G Craciun, A Deshpande, J Jin - Journal of Mathematical Chemistry, 2024 - Springer
Abstract Systems of differential equations with polynomial right-hand sides are very common
in applications. In particular, when restricted to the positive orthant, they appear naturally …

Endotactic networks and toric differential inclusions

G Craciun, A Deshpande - SIAM Journal on Applied Dynamical Systems, 2020 - SIAM
An important dynamical property of biological interaction networks is persistence, which
intuitively means that “no species goes extinct." It has been conjectured that dynamical …

[HTML][HTML] Some minimal bimolecular mass-action systems with limit cycles

B Boros, J Hofbauer - Nonlinear Analysis: Real World Applications, 2023 - Elsevier
We discuss three examples of bimolecular mass-action systems with three species, due to
Feinberg, Berner, Heinrich, and Wilhelm. Each system has a unique positive equilibrium …

The disguised toric locus and affine equivalence of reaction networks

SJ Haque, M Satriano, MŞ Sorea, PY Yu - SIAM Journal on Applied …, 2023 - SIAM
Under the assumption of mass-action kinetics, a dynamical system may be induced by
several different reaction networks and/or parameters. It is therefore possible for a mass …

A Lower Bound on the Dimension of the -Disguised Toric Locus of a Reaction Network

G Craciun, A Deshpande, J Jin - SIAM Journal on Applied Algebra and …, 2024 - SIAM
Polynomial dynamical systems (ie, dynamical systems with polynomial right-hand side) are
ubiquitous in applications, especially as models of reaction networks and interaction …

Weakly reversible mass-action systems with infinitely many positive steady states

B Boros, G Craciun, PY Yu - SIAM Journal on Applied Mathematics, 2020 - SIAM
We show that weakly reversible mass-action systems can have a continuum of positive
steady states, coming from the zeroes of a multivariate polynomial. Moreover, the same is …

The Dimension of the Disguised Toric Locus of a Reaction Network

G Craciun, A Deshpande, J Jin - arXiv preprint arXiv:2412.02620, 2024 - arxiv.org
Under mass-action kinetics, complex-balanced systems emerge from biochemical reaction
networks and exhibit stable and predictable dynamics. For a reaction network $ G $, the …