[HTML][HTML] Advances and trends in omics technology development

X Dai, L Shen - Frontiers in Medicine, 2022 - frontiersin.org
The human history has witnessed the rapid development of technologies such as high-
throughput sequencing and mass spectrometry that led to the concept of 'omics' and …

[HTML][HTML] On the road to explainable AI in drug-drug interactions prediction: A systematic review

TH Vo, NTK Nguyen, QH Kha, NQK Le - Computational and Structural …, 2022 - Elsevier
Over the past decade, polypharmacy instances have been common in multi-diseases
treatment. However, unwanted drug-drug interactions (DDIs) that might cause unexpected …

Investigating cardiotoxicity related with hERG channel blockers using molecular fingerprints and graph attention mechanism

T Wang, J Sun, Q Zhao - Computers in biology and medicine, 2023 - Elsevier
Human ether-a-go-go-related gene (hERG) channel blockade by small molecules is a big
concern during drug development in the pharmaceutical industry. Failure or inhibition of …

scAAGA: Single cell data analysis framework using asymmetric autoencoder with gene attention

R Meng, S Yin, J Sun, H Hu, Q Zhao - Computers in biology and medicine, 2023 - Elsevier
In recent years, single-cell RNA sequencing (scRNA-seq) has emerged as a powerful
technique for investigating cellular heterogeneity and structure. However, analyzing scRNA …

Comprehensive evaluation of deep and graph learning on drug–drug interactions prediction

X Lin, L Dai, Y Zhou, ZG Yu, W Zhang… - Briefings in …, 2023 - academic.oup.com
Recent advances and achievements of artificial intelligence (AI) as well as deep and graph
learning models have established their usefulness in biomedical applications, especially in …

Learning size-adaptive molecular substructures for explainable drug–drug interaction prediction by substructure-aware graph neural network

Z Yang, W Zhong, Q Lv, CYC Chen - Chemical science, 2022 - pubs.rsc.org
Drug–drug interactions (DDIs) can trigger unexpected pharmacological effects on the body,
and the causal mechanisms are often unknown. Graph neural networks (GNNs) have been …

Deep learning for medical image-based cancer diagnosis

X Jiang, Z Hu, S Wang, Y Zhang - Cancers, 2023 - mdpi.com
Simple Summary Deep learning has succeeded greatly in medical image-based cancer
diagnosis. To help readers better understand the current research status and ideas, this …

Application of Artificial Intelligence in Drug–Drug Interactions Prediction: A Review

Y Zhang, Z Deng, X Xu, Y Feng… - Journal of chemical …, 2023 - ACS Publications
Drug–drug interactions (DDI) are a critical aspect of drug research that can have adverse
effects on patients and can lead to serious consequences. Predicting these events …

Attention is all you need: utilizing attention in AI-enabled drug discovery

Y Zhang, C Liu, M Liu, T Liu, H Lin… - Briefings in …, 2024 - academic.oup.com
Recently, attention mechanism and derived models have gained significant traction in drug
development due to their outstanding performance and interpretability in handling complex …

MCFF-MTDDI: multi-channel feature fusion for multi-typed drug–drug interaction prediction

CD Han, CC Wang, L Huang… - Briefings in …, 2023 - academic.oup.com
Adverse drug–drug interactions (DDIs) have become an increasingly serious problem in the
medical and health system. Recently, the effective application of deep learning and …