[HTML][HTML] Molecular profiling in cholangiocarcinoma: a practical guide to next-generation sequencing

A Stenzinger, A Vogel, U Lehmann, A Lamarca… - Cancer Treatment …, 2024 - Elsevier
Cholangiocarcinomas (CCA) are a heterogeneous group of tumors that are classified as
intrahepatic, perihilar, or distal according to the anatomic location within the biliary tract …

Bioinformatics: from NGS data to biological complexity in variant detection and oncological clinical practice

S Dotolo, R Esposito Abate, C Roma, D Guido… - Biomedicines, 2022 - mdpi.com
The use of next-generation sequencing (NGS) techniques for variant detection has become
increasingly important in clinical research and in clinical practice in oncology. Many cancer …

miRNA-Seq tissue diagnostic signature: a novel model for NSCLC subtyping

R Charkiewicz, A Sulewska, A Charkiewicz… - International Journal of …, 2023 - mdpi.com
Non-small cell lung cancer (NSCLC) encompasses distinct histopathological subtypes,
namely adenocarcinoma (AC) and squamous cell lung carcinoma (SCC), which require …

Diagnostics and treatment of ovarian cancer in the era of precision medicine-opportunities and challenges

PA Bukłaho, J Kiśluk, J Nikliński - Frontiers in Oncology, 2023 - frontiersin.org
Due to predictions of increasing incidences and deaths from ovarian cancer, this neoplasm
is a challenge for modern health care. The advent of NGS technology has made it possible …

Machine learning in onco-pharmacogenomics: A path to precision medicine with many challenges

A Mondello, M Dal Bo, G Toffoli… - Frontiers in Pharmacology, 2024 - frontiersin.org
Over the past two decades, Next-Generation Sequencing (NGS) has revolutionized the
approach to cancer research. Applications of NGS include the identification of tumor specific …

A comparison of tissue dissection techniques for diagnostic, prognostic, and theragnostic analysis of human disease

EM Walsh, MK Halushka - Pathobiology, 2023 - karger.com
Histopathology has historically been the critical technique for the diagnosis and treatment of
human disease. Today, genomics, transcriptomics, and proteomics from specific cells, rather …

Assessing the complementary information from an increased number of biologically relevant features in liquid biopsy-derived RNA-Seq data

S Giannoukakos, S D'Ambrosi, D Koppers-Lalic… - Heliyon, 2024 - cell.com
Liquid biopsy-derived RNA sequencing (lbRNA-seq) exhibits significant promise for clinic-
oriented cancer diagnostics due to its non-invasiveness and ease of repeatability. Despite …

Genomic reproducibility in the bioinformatics era

PI Baykal, PP Łabaj, F Markowetz, LM Schriml… - Genome Biology, 2024 - Springer
In biomedical research, validating a scientific discovery hinges on the reproducibility of its
experimental results. However, in genomics, the definition and implementation of …

Current treatment and novel insights regarding ROS1‐targeted therapy in malignant tumors

S Li, H Zhang, T Chen, X Zhang, G Shang - Cancer Medicine, 2024 - Wiley Online Library
Background The proto‐oncogene ROS1 encodes an intrinsic type I membrane protein of the
tyrosine kinase/insulin receptor family. ROS1 facilitates the progression of various …

An update on pharmacotherapies for colorectal cancer: 2023 and beyond

M Zhu, AB Benson III - Expert Opinion on Pharmacotherapy, 2024 - Taylor & Francis
Introduction Colorectal cancer (CRC) is one of the most prevalent and lethal cancers
worldwide. The treatment of metastatic colorectal cancer (mCRC) is difficult, and mCRC has …