Hijackers, hitchhikers, or co-drivers? The mysteries of mobilizable genetic elements

M Ares-Arroyo, C Coluzzi, JA Moura de Sousa… - PLoS …, 2024 - journals.plos.org
Mobile genetic elements shape microbial gene repertoires and populations. Recent results
reveal that many, possibly most, microbial mobile genetic elements require helpers to …

De Novo Genes

L Zhao, N Svetec, DJ Begun - Annual Review of Genetics, 2024 - annualreviews.org
Although the majority of annotated new genes in a given genome appear to have arisen
from duplication-related mechanisms, recent studies have shown that genes can also …

[PDF][PDF] A synergistic, cultivator model of de novo gene origination

UJ Lee, SM Mozeika, L Zhao - Genome Biology and Evolution, 2024 - academic.oup.com
The origin and fixation of evolutionarily young genes is a fundamental question in
evolutionary biology. However, understanding the origins of newly evolved genes arising de …

Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins

N Vakirlis, A Kupczok - Genome Research, 2024 - genome.cshlp.org
Species-specific genes, also known as orphans, are ubiquitous across life's domains. In
prokaryotes, species-specific orphan genes (SSOGs) are mostly thought to originate in …

Large Roles of Small Proteins

AT Burton, R Zeinert, G Storz - Annual Review of Microbiology, 2024 - annualreviews.org
Bacterial proteins of≤ 50 amino acids, denoted small proteins or microproteins, have been
traditionally understudied and overlooked, as standard computational, biochemical, and …

[PDF][PDF] Sequence, Structure, and Functional Space of Drosophila De Novo Proteins

L Middendorf, B Ravi Iyengar… - Genome Biology and …, 2024 - academic.oup.com
During de novo emergence, new protein coding genes emerge from previously nongenic
sequences. The de novo proteins they encode are dissimilar in composition and predicted …

Anti-viral defense by an ADP-ribosyltransferase that targets mRNA to block translation

CN Vassallo, CR Doering, MT Laub - bioRxiv, 2024 - biorxiv.org
Host-pathogen conflicts are crucibles of molecular innovation. Selection for immunity to
pathogens has driven the evolution of sophisticated immunity mechanisms throughout …

Evolution and ecology of anti-defence systems in phages and plasmids

T Niault, S van Houte, E Westra, DC Swarts - Current Biology, 2025 - cell.com
Summary Prokaryotes (Bacteria and Archaea) encode a highly diversified arsenal of
defence systems that protect them against mobile genetic elements, such as phages and …

Expression of Random Sequences and de novo Evolved Genes From the Mouse in Human Cells Reveals Functional Diversity and Specificity

S Aldrovandi, J Fajardo Castro, K Ullrich… - Genome Biology and …, 2024 - academic.oup.com
Proteins that emerge de novo from noncoding DNA could negatively or positively influence
cellular physiology in the sense of providing a possible adaptive advantage. Here, we …

Origin of functional de novo genes in humans from “hopeful monsters”

X Liu, C Xiao, X Xu, J Zhang, F Mo… - Wiley …, 2024 - Wiley Online Library
For a long time, it was believed that new genes arise only from modifications of preexisting
genes, but the discovery of de novo protein‐coding genes that originated from noncoding …