Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding
Crop populations derived from experimental crosses enable the genetic dissection of
complex traits and support modern plant breeding. Among these, multi-parent populations …
complex traits and support modern plant breeding. Among these, multi-parent populations …
Genome-wide association studies in maize: praise and stargaze
Genome-wide association study (GWAS) has become a widely accepted strategy for
decoding genotype-phenotype associations in many species thanks to advances in next …
decoding genotype-phenotype associations in many species thanks to advances in next …
R/qtl2: software for mapping quantitative trait loci with high-dimensional data and multiparent populations
R/qtl2 is an interactive software environment for mapping quantitative trait loci (QTL) in
experimental populations. The R/qtl2 software expands the scope of the widely-used R/qtl …
experimental populations. The R/qtl2 software expands the scope of the widely-used R/qtl …
Mouse genomic variation and its effect on phenotypes and gene regulation
We report genome sequences of 17 inbred strains of laboratory mice and identify almost ten
times more variants than previously known. We use these genomes to explore the …
times more variants than previously known. We use these genomes to explore the …
MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes
Genome‐wide association studies (GWAS) can identify common alleles that contribute to
complex disease susceptibility. Despite the large number of SNPs assessed in each study …
complex disease susceptibility. Despite the large number of SNPs assessed in each study …
Applications of single nucleotide polymorphisms in crop genetics
A Rafalski - Current opinion in plant biology, 2002 - Elsevier
The discovery of single nucleotide polymorphisms (SNPs) and insertions/deletions, which
are the basis of most differences between alleles, has been simplified by recent …
are the basis of most differences between alleles, has been simplified by recent …
MAGIC populations in crops: current status and future prospects
Key message MAGIC populations present novel challenges and opportunities in crops due
to their complex pedigree structure. They offer great potential both for dissecting genomic …
to their complex pedigree structure. They offer great potential both for dissecting genomic …
[HTML][HTML] Genetic mapping of quantitative trait loci in crops
Y Xu, P Li, Z Yang, C Xu - The Crop Journal, 2017 - Elsevier
Dissecting the genetic architecture of complex traits is an ongoing challenge for geneticists.
Two complementary approaches for genetic mapping, linkage mapping and association …
Two complementary approaches for genetic mapping, linkage mapping and association …
The genetic architecture of quantitative traits
TFC Mackay - Annual review of genetics, 2001 - annualreviews.org
▪ Abstract Phenotypic variation for quantitative traits results from the segregation of alleles at
multiple quantitative trait loci (QTL) with effects that are sensitive to the genetic, sexual, and …
multiple quantitative trait loci (QTL) with effects that are sensitive to the genetic, sexual, and …
A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana
PX Kover, W Valdar, J Trakalo, N Scarcelli… - PLoS …, 2009 - journals.plos.org
Identifying natural allelic variation that underlies quantitative trait variation remains a
fundamental problem in genetics. Most studies have employed either simple synthetic …
fundamental problem in genetics. Most studies have employed either simple synthetic …