RNA Degradation in Saccharomyces cerevisae

R Parker - Genetics, 2012 - academic.oup.com
All RNA species in yeast cells are subject to turnover. Work over the past 20 years has
defined degradation mechanisms for messenger RNAs, transfer RNAs, ribosomal RNAs …

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing

JR Haag, CS Pikaard - Nature reviews Molecular cell biology, 2011 - nature.com
In all eukaryotes, nuclear DNA-dependent RNA polymerases I, II and III synthesize the
myriad RNAs that are essential for life. Remarkably, plants have evolved two additional …

[HTML][HTML] Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis

G Haimovich, DA Medina, SZ Causse, M Garber… - Cell, 2013 - cell.com
Maintaining proper mRNA levels is a key aspect in the regulation of gene expression. The
balance between mRNA synthesis and decay determines these levels. We demonstrate that …

[HTML][HTML] Single-molecule mRNA decay measurements reveal promoter-regulated mRNA stability in yeast

T Trcek, DR Larson, A Moldón, CC Query, RH Singer - Cell, 2011 - cell.com
Messenger RNA decay measurements are typically performed on a population of cells.
However, this approach cannot reveal sufficient complexity to provide information on …

Ccr4-Not complex: the control freak of eukaryotic cells

JE Miller, JC Reese - Critical reviews in biochemistry and …, 2012 - Taylor & Francis
The purpose of this review is to provide an analysis of the latest developments on the
functions of the carbon catabolite-repression 4-Not (Ccr4-Not) complex in regulating …

Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression

JE Pérez-Ortín, P Alepuz, S Chávez… - Journal of molecular …, 2013 - Elsevier
Abstract mRNA concentration depends on the balance between transcription and
degradation rates. On both sides of the equilibrium, synthesis and degradation show …

[HTML][HTML] Promoter elements regulate cytoplasmic mRNA decay

A Bregman, M Avraham-Kelbert, O Barkai, L Duek… - Cell, 2011 - cell.com
Promoters are DNA elements that enable transcription and its regulation by trans-acting
factors. Here, we demonstrate that yeast promoters can also regulate mRNA decay after the …

RNA polymerase II subunits link transcription and mRNA decay to translation

L Harel-Sharvit, N Eldad, G Haimovich, O Barkai… - Cell, 2010 - cell.com
Little is known about crosstalk between the eukaryotic transcription and translation
machineries that operate in different cell compartments. The yeast proteins Rpb4p and …

Transcription dynamics regulate poly (A) tails and expression of the RNA degradation machinery to balance mRNA levels

B Slobodin, A Bahat, U Sehrawat, S Becker-Herman… - Molecular cell, 2020 - cell.com
Gene expression is regulated by the rates of synthesis and degradation of mRNAs, but how
these processes are coordinated is poorly understood. Here, we show that reduced …

Decoupled transcript and protein concentrations ensure histone homeostasis in different nutrients

D Chatzitheodoridou, D Bureik, F Padovani… - The EMBO …, 2024 - embopress.org
To maintain protein homeostasis in changing nutrient environments, cells must precisely
control the amount of their proteins, despite the accompanying changes in cell growth and …