Features and applications of haplotypes in crop breeding

JA Bhat, D Yu, A Bohra, SA Ganie… - Communications …, 2021 - nature.com
Climate change with altered pest-disease dynamics and rising abiotic stresses threatens
resource-constrained agricultural production systems worldwide. Genomics-assisted …

Contributions of spermatozoa to embryogenesis: assays to evaluate their genetic and epigenetic fitness

DT Carrell - Reproductive biomedicine online, 2008 - Elsevier
During fertilization, spermatozoa contribute genetic and epigenetic factors that affect early
embryogenesis. Genetic factors include a haploid genome with intact coding regions and …

Genome-wide association for major depressive disorder: a possible role for the presynaptic protein piccolo

PF Sullivan, EJC de Geus, G Willemsen… - Molecular …, 2009 - nature.com
Major depressive disorder (MDD) is a common complex trait with enormous public health
significance. As part of the Genetic Association Information Network initiative of the US …

Genome-wide haplotype association study identifies the FRMD4A gene as a risk locus for Alzheimer's disease

JC Lambert, B Grenier-Boley, D Harold… - Molecular …, 2013 - nature.com
Recently, several genome-wide association studies (GWASs) have led to the discovery of
nine new loci of genetic susceptibility in Alzheimer's disease (AD). However, the landscape …

Efficient genome-wide sequencing and low-coverage pedigree analysis from noninvasively collected samples

N Snyder-Mackler, WH Majoros, ML Yuan… - Genetics, 2016 - academic.oup.com
Research on the genetics of natural populations was revolutionized in the 1990s by
methods for genotyping noninvasively collected samples. However, these methods have …

Common variation in genes related to innate immunity and risk of adult glioma

P Rajaraman, AV Brenner, MA Butler, SS Wang… - … Biomarkers & Prevention, 2009 - AACR
Current evidence suggests that immune system alterations contribute to the etiology of adult
glioma, the most common adult brain tumor. Although previous studies have focused on …

Selecting closely-linked SNPs based on local epistatic effects for haplotype construction improves power of association mapping

F Liu, RH Schmidt, JC Reif… - G3: Genes, Genomes …, 2019 - academic.oup.com
Genome-wide association studies (GWAS) have gained central importance for the
identification of candidate loci underlying complex traits. Single nucleotide polymorphism …

Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway

HD Hosgood III, I Menashe, M Shen, M Yeager… - …, 2008 - academic.oup.com
Common genetic variation may play an important role in altering lung cancer risk. We
conducted a pathway-based candidate gene evaluation to identify genetic variations that …

Learning the optimal scale for GWAS through hierarchical SNP aggregation

F Guinot, M Szafranski, C Ambroise, F Samson - BMC bioinformatics, 2018 - Springer
Abstract Background Genome-Wide Association Studies (GWAS) seek to identify causal
genomic variants associated with rare human diseases. The classical statistical approach for …

A hidden Markov random field model for genome-wide association studies

H Li, Z Wei, J Maris - Biostatistics, 2010 - academic.oup.com
Genome-wide association studies (GWAS) are increasingly utilized for identifying novel
susceptible genetic variants for complex traits, but there is little consensus on analysis …