In-cell structural biology by NMR: the benefits of the atomic scale
FX Theillet - Chemical reviews, 2022 - ACS Publications
In-cell structural biology aims at extracting structural information about proteins or nucleic
acids in their native, cellular environment. This emerging field holds great promise and is …
acids in their native, cellular environment. This emerging field holds great promise and is …
[HTML][HTML] Nucleic acids analysis
Nucleic acids are natural biopolymers of nucleotides that store, encode, transmit and
express genetic information, which play central roles in diverse cellular events and diseases …
express genetic information, which play central roles in diverse cellular events and diseases …
Repurposing an adenine riboswitch into a fluorogenic imaging and sensing tag
Fluorogenic RNA aptamers are used to genetically encode fluorescent RNA and to construct
RNA-based metabolite sensors. Unlike naturally occurring aptamers that efficiently fold and …
RNA-based metabolite sensors. Unlike naturally occurring aptamers that efficiently fold and …
RNA origami scaffolds facilitate cryo-EM characterization of a Broccoli–Pepper aptamer FRET pair
N Sampedro Vallina, EKS McRae… - Nucleic Acids …, 2023 - academic.oup.com
Cryogenic electron microscopy (cryo-EM) is a promising method for characterizing the
structure of larger RNA structures and complexes. However, the structure of individual …
structure of larger RNA structures and complexes. However, the structure of individual …
Optogenetics and biosensors set the stage for metabolic cybergenetics
C Carrasco-López, SA García-Echauri, T Kichuk… - Current opinion in …, 2020 - Elsevier
Highlights•Metabolic cybergenetics promises unprecedented real-time control of
fermentations.•Optogenetic regulators make ideal actuators for metabolic cybergenetics.• …
fermentations.•Optogenetic regulators make ideal actuators for metabolic cybergenetics.• …
Imaging Intracellular S-Adenosyl Methionine Dynamics in Live Mammalian Cells with a Genetically Encoded Red Fluorescent RNA-Based Sensor
To understand the role of intracellular metabolites in cellular processes, it is important to
measure the dynamics and fluxes of small molecules in living cells. Although conventional …
measure the dynamics and fluxes of small molecules in living cells. Although conventional …
RNA-based fluorescent biosensors for live cell imaging of small molecules and RNAs
Y Su, MC Hammond - Current opinion in biotechnology, 2020 - Elsevier
Highlights•Palette of fluorogenic RNA-dye pairs now are available for biosensor
engineering.•RNA-based fluorescent biosensors developed for molecular imaging …
engineering.•RNA-based fluorescent biosensors developed for molecular imaging …
Genetically encoded RNA-based sensors with Pepper fluorogenic aptamer
Z Chen, W Chen, Z Reheman, H Jiang… - Nucleic Acids …, 2023 - academic.oup.com
Sensors to measure the abundance and signaling of intracellular molecules are crucial for
understanding their physiological functions. Although conventional fluorescent protein …
understanding their physiological functions. Although conventional fluorescent protein …
Inert Pepper aptamer-mediated endogenous mRNA recognition and imaging in living cells
The development of RNA aptamers/fluorophores system is highly desirable for
understanding the dynamic molecular biology of RNAs in vivo. Peppers-based imaging …
understanding the dynamic molecular biology of RNAs in vivo. Peppers-based imaging …
In Situ Genetically Cascaded Amplification for Imaging RNA Subcellular Locations
K Ren, R Wu… - Journal of the …, 2020 - ACS Publications
In situ amplification methods, such as hybridization chain reaction, are valuable tools for
mapping the spatial distribution and subcellular location of target analytes. However, the live …
mapping the spatial distribution and subcellular location of target analytes. However, the live …