Long non-coding RNAs and complex diseases: from experimental results to computational models

X Chen, CC Yan, X Zhang, ZH You - Briefings in bioinformatics, 2017 - academic.oup.com
LncRNAs have attracted lots of attentions from researchers worldwide in recent decades.
With the rapid advances in both experimental technology and computational prediction …

Technological developments in lncRNA biology

S Jathar, V Kumar, J Srivastava, V Tripathi - Long Non Coding RNA …, 2017 - Springer
It is estimated that more than 90% of the mammalian genome is transcribed as non-coding
RNAs. Recent evidences have established that these non-coding transcripts are not junk or …

NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants

L Zhao, J Wang, Y Li, T Song, Y Wu, S Fang… - Nucleic acids …, 2021 - academic.oup.com
Abstract NONCODE (http://www. noncode. org/) is a comprehensive database of collection
and annotation of noncoding RNAs, especially long non-coding RNAs (lncRNAs) in animals …

Using network distance analysis to predict lncRNA–miRNA interactions

L Zhang, P Yang, H Feng, Q Zhao, H Liu - … sciences: computational life …, 2021 - Springer
LncRNA–miRNA interactions contribute to the regulation of therapeutic targets and
diagnostic biomarkers in multifarious human diseases. However, it remains difficult to …

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

YJ Kang, DC Yang, L Kong, M Hou… - Nucleic acids …, 2017 - academic.oup.com
With advances in next-generation sequencing technologies, numerous novel transcripts in a
large number of organisms have been identified. With the goal of fast, accurate assessment …

NONCODE 2016: an informative and valuable data source of long non-coding RNAs

Y Zhao, H Li, S Fang, Y Kang, W Wu, Y Hao… - Nucleic acids …, 2016 - academic.oup.com
Abstract NONCODE (http://www. bioinfo. org/noncode/) is an interactive database that aims
to present the most complete collection and annotation of non-coding RNAs, especially long …

NONCODEv4: exploring the world of long non-coding RNA genes

C Xie, J Yuan, H Li, M Li, G Zhao, D Bu… - Nucleic acids …, 2014 - academic.oup.com
Abstract NONCODE (http://www. bioinfo. org/noncode/) is an integrated knowledge
database dedicated to non-coding RNAs (excluding tRNAs and rRNAs). Non-coding RNAs …

Draft genome sequence of the oilseed species Ricinus communis

AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis… - Nature …, 2010 - nature.com
Castor bean (Ricinus communis) is an oilseed crop that belongs to the spurge
(Euphorbiaceae) family, which comprises∼ 6,300 species that include cassava (Manihot …

NONCODE v3. 0: integrative annotation of long noncoding RNAs

D Bu, K Yu, S Sun, C Xie, G Skogerbø… - Nucleic acids …, 2012 - academic.oup.com
Facilitated by the rapid progress of high-throughput sequencing technology, a large number
of long noncoding RNAs (lncRNAs) have been identified in mammalian transcriptomes over …

[HTML][HTML] Genetic variation in the non-coding genome: Involvement of micro-RNAs and long non-coding RNAs in disease

B Hrdlickova, RC de Almeida, Z Borek… - Biochimica et Biophysica …, 2014 - Elsevier
It has been found that the majority of disease-associated genetic variants identified by
genome-wide association studies are located outside of protein-coding regions, where they …