Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

Linking metagenomics to aquatic microbial ecology and biogeochemical cycles

HP Grossart, R Massana, KD McMahon… - Limnology and …, 2020 - Wiley Online Library
Microbial communities are essential components of aquatic ecosystems through their
contribution to food web dynamics and biogeochemical processes. Aquatic microbial …

Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

F Wemheuer, JA Taylor, R Daniel, E Johnston… - Environmental …, 2020 - Springer
Abstract Background Sequencing of 16S rRNA genes has become a powerful technique to
study microbial communities and their responses towards changing environmental …

Diversity-triggered deterministic bacterial assembly constrains community functions

W Xun, W Li, W Xiong, Y Ren, Y Liu, Y Miao… - Nature …, 2019 - nature.com
A growing body of evidence suggests that microbial α-diversity (local species richness) may
have positive effects on ecosystem function. However, less attention has been paid to β …

New insight into ammonium oxidation processes and mechanisms mediated by manganese oxide in constructed wetlands

C Cheng, Q He, J Zhang, H Chai, Y Yang… - Water Research, 2022 - Elsevier
Manganese oxide (MnOx) mediated ammonium (NH 4+) oxidation in wetlands is receiving
increased interest; however, the biochemical mechanisms of this process are vague due to …

Comparison of two 16S rRNA primers (V3–V4 and V4–V5) for studies of arctic microbial communities

E Fadeev, MG Cardozo-Mino, JZ Rapp… - Frontiers in …, 2021 - frontiersin.org
Microbial communities of the Arctic Ocean are poorly characterized in comparison to other
aquatic environments as to their horizontal, vertical, and temporal turnover. Yet, recent …

Life-history strategies of soil microbial communities in an arid ecosystem

Y Chen, JW Neilson, P Kushwaha, RM Maier… - The ISME …, 2021 - academic.oup.com
The overwhelming taxonomic diversity and metabolic complexity of microorganisms can be
simplified by a life-history classification; copiotrophs grow faster and rely on resource …

High salinity inhibits soil bacterial community mediating nitrogen cycling

X Li, A Wang, W Wan, X Luo, L Zheng… - Applied and …, 2021 - Am Soc Microbiol
Salinization is considered a major threat to soil fertility and agricultural productivity
throughout the world. Soil microbes play a crucial role in maintaining ecosystem stability and …

Leachable additives of tire particles explain the shift in microbial community composition and function in coastal sediments

J Ding, F Meng, H Chen, Q Chen, A Hu… - Environmental …, 2022 - ACS Publications
Massive microplastics are deposited in the coastal zone. Tire particles (TPs) are an
important microplastic source, but little is known about how TPs affect the microbial …

Microdiversity ensures the maintenance of functional microbial communities under changing environmental conditions

N García-García, J Tamames, AM Linz… - The ISME …, 2019 - academic.oup.com
Microdiversity can lead to different ecotypes within the same species. These are assumed to
provide stability in time and space to those species. However, the role of microdiversity in …