Biological roles of adenine methylation in RNA

K Boulias, EL Greer - Nature Reviews Genetics, 2023 - nature.com
Abstract N 6-Methyladenosine (m6A) is one of the most abundant modifications of the
epitranscriptome and is found in cellular RNAs across all kingdoms of life. Advances in …

The epitranscriptome beyond m6A

D Wiener, S Schwartz - Nature Reviews Genetics, 2021 - nature.com
Following its transcription, RNA can be modified by> 170 chemically distinct types of
modifications—the epitranscriptome. In recent years, there have been substantial efforts to …

Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution

Q Dai, LS Zhang, HL Sun, K Pajdzik, L Yang… - Nature …, 2023 - nature.com
Functional characterization of pseudouridine (Ψ) in mammalian mRNA has been hampered
by the lack of a quantitative method that maps Ψ in the whole transcriptome. We report …

A comprehensive review of m6A/m6Am RNA methyltransferase structures

S Oerum, V Meynier, M Catala, C Tisné - Nucleic acids research, 2021 - academic.oup.com
Gene expression is regulated at many levels including co-or post-transcriptionally, where
chemical modifications are added to RNA on riboses and bases. Expression control via RNA …

Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing

O Begik, MC Lucas, LP Pryszcz, JM Ramirez… - Nature …, 2021 - nature.com
Nanopore RNA sequencing shows promise as a method for discriminating and identifying
different RNA modifications in native RNA. Expanding on the ability of nanopore sequencing …

Ribosome biogenesis factors—from names to functions

K Dörner, C Ruggeri, I Zemp, U Kutay - The EMBO journal, 2023 - embopress.org
The assembly of ribosomal subunits is a highly orchestrated process that involves a huge
cohort of accessory factors. Most eukaryotic ribosome biogenesis factors were first identified …

Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing

NM Martinez, A Su, MC Burns, JK Nussbacher… - Molecular cell, 2022 - cell.com
Pseudouridine is a modified nucleotide that is prevalent in human mRNAs and is
dynamically regulated. Here, we investigate when in their life cycle mRNAs become …

Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome

PR Bhatt, A Scaiola, G Loughran, M Leibundgut… - Science, 2021 - science.org
Programmed ribosomal frameshifting is a key event during translation of the severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA genome that allows synthesis of the …

Quantitative profiling of pseudouridylation landscape in the human transcriptome

M Zhang, Z Jiang, Y Ma, W Liu, Y Zhuang, B Lu… - Nature chemical …, 2023 - nature.com
Pseudouridine (Ψ) is an abundant post-transcriptional RNA modification in ncRNA and
mRNA. However, stoichiometric measurement of individual Ψ sites in human transcriptome …

The human 18S rRNA m6A methyltransferase METTL5 is stabilized by TRMT112

N Van Tran, FGM Ernst, BR Hawley… - Nucleic acids …, 2019 - academic.oup.com
Abstract N6-methyladenosine (m6A) has recently been found abundantly on messenger
RNA and shown to regulate most steps of mRNA metabolism. Several important m6A …