[HTML][HTML] TAPAS: an open-source software package for translational neuromodeling and computational psychiatry

S Frässle, EA Aponte, S Bollmann… - Frontiers in …, 2021 - frontiersin.org
Psychiatry faces fundamental challenges with regard to mechanistically guided differential
diagnosis, as well as prediction of clinical trajectories and treatment response of individual …

Imaging faster neural dynamics with fast fMRI: A need for updated models of the hemodynamic response

JR Polimeni, LD Lewis - Progress in neurobiology, 2021 - Elsevier
Fast fMRI enables the detection of neural dynamics over timescales of hundreds of
milliseconds, suggesting it may provide a new avenue for studying subsecond neural …

[HTML][HTML] Dynamic causal modelling revisited

KJ Friston, KH Preller, C Mathys, H Cagnan, J Heinzle… - Neuroimage, 2019 - Elsevier
This paper revisits the dynamic causal modelling of fMRI timeseries by replacing the usual
(Taylor) approximation to neuronal dynamics with a neural mass model of the canonical …

Fast fMRI can detect oscillatory neural activity in humans

LD Lewis, K Setsompop, BR Rosen… - Proceedings of the …, 2016 - National Acad Sciences
Oscillatory neural dynamics play an important role in the coordination of large-scale brain
networks. High-level cognitive processes depend on dynamics evolving over hundreds of …

[HTML][HTML] Linking brain vascular physiology to hemodynamic response in ultra-high field MRI

K Uludağ, P Blinder - Neuroimage, 2018 - Elsevier
Functional MRI using blood oxygenation level-dependent (BOLD) contrast indirectly probes
neuronal activity via evoked cerebral blood volume (CBV) and oxygenation changes. Thus …

[HTML][HTML] Regression DCM for fMRI

S Frässle, EI Lomakina, A Razi, KJ Friston… - NeuroImage, 2017 - Elsevier
The development of large-scale network models that infer the effective (directed)
connectivity among neuronal populations from neuroimaging data represents a key …

[HTML][HTML] The effect of lysergic acid diethylamide (LSD) on whole-brain functional and effective connectivity

P Bedford, DJ Hauke, Z Wang, V Roth… - …, 2023 - nature.com
Psychedelics have emerged as promising candidate treatments for various psychiatric
conditions, and given their clinical potential, there is a need to identify biomarkers that …

[HTML][HTML] A dynamical model of the laminar BOLD response

M Havlicek, K Uludağ - NeuroImage, 2020 - Elsevier
High-resolution functional magnetic resonance imaging (fMRI) using blood oxygenation
dependent level-dependent (BOLD) signal is an increasingly popular tool to non-invasively …

Analysis strategies for high-resolution UHF-fMRI data

JR Polimeni, V Renvall, N Zaretskaya, B Fischl - NeuroImage, 2018 - Elsevier
Functional MRI (fMRI) benefits from both increased sensitivity and specificity with increasing
magnetic field strength, making it a key application for Ultra-High Field (UHF) MRI scanners …

A hemodynamic model for layered BOLD signals

J Heinzle, PJ Koopmans, HEM den Ouden, S Raman… - Neuroimage, 2016 - Elsevier
High-resolution blood oxygen level dependent (BOLD) functional magnetic resonance
imaging (fMRI) at the sub-millimeter scale has become feasible with recent advances in MR …