Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …
functions. Understanding the complexities of protein higher-order structures and dynamics …
Theory of protein folding: the energy landscape perspective
JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …
Insights from molecular dynamics simulations for computational protein design
MC Childers, V Daggett - Molecular systems design & engineering, 2017 - pubs.rsc.org
A grand challenge in the field of structural biology is to design and engineer proteins that
exhibit targeted functions. Although much success on this front has been achieved, design …
exhibit targeted functions. Although much success on this front has been achieved, design …
Probing protein folding and conformational transitions with fluorescence
CA Royer - Chemical reviews, 2006 - ACS Publications
Fluorescence arguably constitutes the most widely used experimental approach in the field
of protein folding. Hence, any review of the use of fluorescence to probe protein stability and …
of protein folding. Hence, any review of the use of fluorescence to probe protein stability and …
Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
Y Duan, PA Kollman - Science, 1998 - science.org
An implementation of classical molecular dynamics on parallel computers of increased
efficiency has enabled a simulation of protein folding with explicit representation of water for …
efficiency has enabled a simulation of protein folding with explicit representation of water for …
Protein folding: a perspective from theory and experiment
The mechanism of protein folding (represented schematically below) is one of the most
fascinating problems in the field of chemical reactions. This review presents the progess …
fascinating problems in the field of chemical reactions. This review presents the progess …
Folding funnels, binding funnels, and protein function
Folding funnels have been the focus of considerable attention during the last few years.
These have mostly been discussed in the general context of the theory of protein folding …
These have mostly been discussed in the general context of the theory of protein folding …
Microdroplet fusion mass spectrometry for fast reaction kinetics
We investigated the fusion of high-speed liquid droplets as a way to record the kinetics of
liquid-phase chemical reactions on the order of microseconds. Two streams of micrometer …
liquid-phase chemical reactions on the order of microseconds. Two streams of micrometer …
Protein fluorescence
JR Lakowicz, JR Lakowicz - Principles of fluorescence spectroscopy, 1999 - Springer
Discussions of biochemical fluorescence frequently start with the subject of protein
fluorescence. This is because, among biopolymers, proteins are unique in displaying useful …
fluorescence. This is because, among biopolymers, proteins are unique in displaying useful …
Single-molecule fluorescence studies of protein folding and conformational dynamics
Single-molecule measurements provide unique information on heterogeneous populations
of molecules: They give access to the complete distribution of observables (rather than only …
of molecules: They give access to the complete distribution of observables (rather than only …