Industrial applications of enzyme biocatalysis: Current status and future aspects

JM Choi, SS Han, HS Kim - Biotechnology advances, 2015 - Elsevier
Enzymes are the most proficient catalysts, offering much more competitive processes
compared to chemical catalysts. The number of industrial applications for enzymes has …

Duplexed aptamers: history, design, theory, and application to biosensing

JD Munzar, A Ng, D Juncker - Chemical Society Reviews, 2019 - pubs.rsc.org
Nucleic acid aptamers are single stranded DNA or RNA sequences that specifically bind a
cognate ligand. In addition to their widespread use as stand-alone affinity binding reagents …

[HTML][HTML] Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

G Agam, C Gebhardt, M Popara, R Mächtel, J Folz… - Nature …, 2023 - nature.com
Single-molecule Förster-resonance energy transfer (smFRET) experiments allow the study
of biomolecular structure and dynamics in vitro and in vivo. We performed an international …

[HTML][HTML] Protein conformational plasticity and complex ligand-binding kinetics explored by atomistic simulations and Markov models

N Plattner, F Noé - Nature communications, 2015 - nature.com
Understanding the structural mechanisms of protein–ligand binding and their dependence
on protein sequence and conformation is of fundamental importance for biomedical …

[HTML][HTML] Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers

M de Boer, G Gouridis, R Vietrov, SL Begg… - Elife, 2019 - elifesciences.org
Substrate-binding proteins (SBPs) are associated with ATP-binding cassette importers and
switch from an open to a closed conformation upon substrate binding, providing specificity …

Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale

MF Juette, DS Terry, MR Wasserman, RB Altman… - Nature …, 2016 - nature.com
Single-molecule fluorescence microscopy is uniquely suited for detecting transient
molecular recognition events, yet achieving the time resolution and statistics needed to …

[HTML][HTML] Protein conformational dynamics dictate the binding affinity for a ligand

MH Seo, J Park, E Kim, S Hohng, HS Kim - Nature communications, 2014 - nature.com
Interactions between a protein and a ligand are essential to all biological processes. Binding
and dissociation are the two fundamental steps of ligand–protein interactions, and …

Ultrafast bioorthogonal spin-labeling and distance measurements in mammalian cells using small, genetically encoded tetrazine amino acids

S Jana, EGB Evans, HS Jang, S Zhang… - Journal of the …, 2023 - ACS Publications
Site-directed spin-labeling (SDSL)─ in combination with double electron–electron
resonance (DEER) spectroscopy─ has emerged as a powerful technique for determining …

Stochastic protein interactions monitored by hundreds of single-molecule plasmonic biosensors

MA Beuwer, MWJ Prins, P Zijlstra - Nano letters, 2015 - ACS Publications
We present a plasmonic biosensor based on hundreds of individual gold nanorods with
single-molecule sensitivity that are simultaneously monitored in real-time within a dark-field …

Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ

G Gouridis, GK Schuurman-Wolters, E Ploetz… - Nature Structural & …, 2015 - nature.com
The conformational dynamics in ABC transporters is largely elusive. The ABC importer
GlnPQ from Lactococcus lactis has different covalently linked substrate-binding domains …