Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model
Relaxed clock models enable estimation of molecular substitution rates across lineages and
are widely used in phylogenetics for dating evolutionary divergence times. Under the …
are widely used in phylogenetics for dating evolutionary divergence times. Under the …
StarBeast3: adaptive parallelized Bayesian inference under the multispecies coalescent
As genomic sequence data become increasingly available, inferring the phylogeny of the
species as that of concatenated genomic data can be enticing. However, this approach …
species as that of concatenated genomic data can be enticing. However, this approach …
Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates
Background Seahorses, seadragons, pygmy pipehorses, and pipefishes (Syngnathidae,
Syngnathiformes) are among the most recognizable groups of fishes because of their …
Syngnathiformes) are among the most recognizable groups of fishes because of their …
Extant species fail to estimate ancestral geographical ranges at older nodes in primate phylogeny
AL Wisniewski, GT Lloyd… - Proceedings of the …, 2022 - royalsocietypublishing.org
A clade's evolutionary history is shaped, in part, by geographical range expansion,
sweepstakes dispersal and local extinction. A rigorous understanding of historical …
sweepstakes dispersal and local extinction. A rigorous understanding of historical …
An efficient coalescent epoch model for Bayesian phylogenetic inference
RR Bouckaert - Systematic Biology, 2022 - academic.oup.com
We present a two-headed approach called Bayesian Integrated Coalescent Epoch PlotS
(BICEPS) for efficient inference of coalescent epoch models. Firstly, we integrate out …
(BICEPS) for efficient inference of coalescent epoch models. Firstly, we integrate out …
Phylogenomics of Anguis and Pseudopus (Squamata, Anguidae) indicates Balkan-Apennine mitochondrial capture associated with the Messinian event
A dated phylogenetic hypothesis on the evolutionary history of the extant taxa of the Western
Palearctic lizards Anguis and Pseudopus is revised using genome-wide nuclear DNA and …
Palearctic lizards Anguis and Pseudopus is revised using genome-wide nuclear DNA and …
Cryptic biodiversity in the commercial diamondback squid Thysanoteuthis rhombus Troschel 1857
Cephalopod fisheries are increasing, but little is known about the cryptic diversity of some
key commercial species. Recent studies have shown that cryptic speciation is common in …
key commercial species. Recent studies have shown that cryptic speciation is common in …
The small and inconspicuous majority: Revealing the megadiversity and historical biogeography of the Pristimantis unistrigatus species group (Anura, Strabomantidae …
AT Mônico, ED Koch, M Ferrão, IY Fernandes… - Molecular Phylogenetics …, 2024 - Elsevier
With more than 600 recognized species, the genus Pristimantis is already the most diverse
among vertebrates, but described species only represent a fraction of the actual diversity in …
among vertebrates, but described species only represent a fraction of the actual diversity in …
Quantitatively defining species boundaries with more efficiency and more biological realism
J Douglas, R Bouckaert - Communications Biology, 2022 - nature.com
We introduce a widely applicable species delimitation method based on the multispecies
coalescent model that is more efficient and more biologically realistic than existing methods …
coalescent model that is more efficient and more biologically realistic than existing methods …
Dated Phylogeny of Astragalus Section Stereothrix (Fabaceae) and Allied Taxa in the Hypoglottis Clade
Simple Summary Biological taxonomic research deals with the grouping of organisms into
entities that reflect their evolutionary history and relationships. In the species-rich plant …
entities that reflect their evolutionary history and relationships. In the species-rich plant …