Tools for genetic studies in experimental populations of polyploids
Polyploid organisms carry more than two copies of each chromosome, a condition rarely
tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the …
tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the …
Development and applications of a high throughput genotyping tool for polyploid crops: single nucleotide polymorphism (SNP) array
Polypoid species play significant roles in agriculture and food production. Many crop
species are polyploid, such as potato, wheat, strawberry, and sugarcane. Genotyping has …
species are polyploid, such as potato, wheat, strawberry, and sugarcane. Genotyping has …
Genotyping polyploids from messy sequencing data
Gerard et al. highlight several issues encountered when genotyping polyploid organisms
from next-generation sequencing data, including allelic bias, overdispersion, and outlying …
from next-generation sequencing data, including allelic bias, overdispersion, and outlying …
Genetic variance partitioning and genome-wide prediction with allele dosage information in autotetraploid potato
As one of the world's most important food crops, the potato (Solanum tuberosum L.) has
spurred innovation in autotetraploid genetics, including in the use of SNP arrays to …
spurred innovation in autotetraploid genetics, including in the use of SNP arrays to …
Genetic and genomic resources for Rubus breeding: a roadmap for the future
Rubus fruits are high-value crops that are sought after by consumers for their flavor, visual
appeal, and health benefits. To meet this demand, production of red and black raspberries …
appeal, and health benefits. To meet this demand, production of red and black raspberries …
Linkage disequilibrium and evaluation of genome-wide association mapping models in tetraploid potato
SK Sharma, K MacKenzie, K McLean… - G3: Genes …, 2018 - academic.oup.com
Genome-wide association studies (GWAS) have become a powerful tool for analyzing
complex traits in crop plants. The current study evaluates the efficacy of various GWAS …
complex traits in crop plants. The current study evaluates the efficacy of various GWAS …
Heritable microbiome variation is correlated with source environment in locally adapted maize varieties
Beneficial interactions with microorganisms are pivotal for crop performance and resilience.
However, it remains unclear how heritable the microbiome is with respect to the host plant …
However, it remains unclear how heritable the microbiome is with respect to the host plant …
polymapR—linkage analysis and genetic map construction from F1 populations of outcrossing polyploids
Motivation Polyploid species carry more than two copies of each chromosome, a condition
found in many of the world's most important crops. Genetic mapping in polyploids is more …
found in many of the world's most important crops. Genetic mapping in polyploids is more …
Genotyping-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato
SK Sharma, K McLean, PE Hedley, F Dale… - Theoretical and Applied …, 2024 - Springer
Key message De novo genotyping in potato using methylation-sensitive GBS discovers
SNPs largely confined to genic or gene-associated regions and displays enhanced …
SNPs largely confined to genic or gene-associated regions and displays enhanced …
Biotechnology: An advanced tool for crop improvement
T Adlak, S Tiwari, MK Tripathi, N Gupta… - Current Journal of …, 2019 - journal.send2sub.com
Plant breeding is mainly concerned with genetic improvement of crops through
hybridization, screening and selection of advance lines. The conventional methods give …
hybridization, screening and selection of advance lines. The conventional methods give …