Phase separation of DNA: From past to present

JT King, A Shakya - Biophysical Journal, 2021 - cell.com
Phase separation of biological molecules, such as nucleic acids and proteins, has garnered
widespread attention across many fields in recent years. For instance, liquid-liquid phase …

Liquid-liquid phase separation of histone proteins in cells: role in chromatin organization

A Shakya, S Park, N Rana, JT King - Biophysical journal, 2020 - cell.com
Liquid-liquid phase separation (LLPS) of proteins and nucleic acids has emerged as an
important phenomenon in membraneless intracellular organization. We demonstrate that the …

Histone H1 mutations in lymphoma: a link (er) between chromatin organization, developmental reprogramming, and cancer

AA Soshnev, CD Allis, E Cesarman, AM Melnick - Cancer research, 2021 - AACR
Aberrant cell fate decisions due to transcriptional misregulation are central to malignant
transformation. Histones are the major constituents of chromatin, and mutations in histone …

Dependence of fluorescent protein brightness on protein concentration in solution and enhancement of it

TJ Morikawa, H Fujita, A Kitamura, T Horio… - Scientific reports, 2016 - nature.com
Fluorescent proteins have been widely used in biology because of their compatibility and
varied applications in living specimens. Fluorescent proteins are often undesirably sensitive …

Local raster image correlation spectroscopy generates high-resolution intracellular diffusion maps

L Scipioni, M Di Bona, G Vicidomini, A Diaspro… - Communications …, 2018 - nature.com
Raster image correlation spectroscopy (RICS) is a powerful method for measuring molecular
diffusion in live cells directly from images acquired on a laser scanning microscope …

The nucleic acid binding protein SFPQ represses EBV lytic reactivation by promoting histone H1 expression

LA Murray-Nerger, C Lozano, EM Burton, Y Liao… - Nature …, 2024 - nature.com
Epstein-Barr virus (EBV) uses a biphasic lifecycle of latency and lytic reactivation to infect>
95% of adults worldwide. Despite its central role in EBV persistence and oncogenesis, much …

[HTML][HTML] Molecular dynamics of histone H1

TW Flanagan, DT Brown - Biochimica et Biophysica Acta (BBA)-Gene …, 2016 - Elsevier
The H1 or linker histones bind dynamically to chromatin in living cells via a process that
involves transient association with the nucleosome near the DNA entry/exit site followed by …

Single molecule analysis of CENP-A chromatin by high-speed atomic force microscopy

DP Melters, KC Neuman, RS Bentahar, T Rakshit… - Elife, 2023 - elifesciences.org
Chromatin accessibility is modulated in a variety of ways to create open and closed
chromatin states, both of which are critical for eukaryotic gene regulation. At the single …

Modulation of chromatin function through linker histone H1 variants

A Kowalski, J Pałyga - Biology of the Cell, 2016 - Wiley Online Library
In this review, the structural aspects of linker H1 histones are presented as a background for
characterization of the factors influencing their function in animal and human chromatin. The …

Chromosome-wide co-fluctuation of stochastic gene expression in mammalian cells

M Sun, J Zhang - PLoS genetics, 2019 - journals.plos.org
Gene expression is subject to stochastic noise, but to what extent and by which means such
stochastic variations are coordinated among different genes are unclear. We hypothesize …