Scaling up: A guide to highthroughput genomic approaches for biodiversity analysis

TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNAbased
methods used to generate data for biodiversity and biomonitoring studies. As environmental …

Plant DNA barcoding: from gene to genome

X Li, Y Yang, RJ Henry, M Rossetto, Y Wang… - Biological …, 2015 - Wiley Online Library
ABSTRACT DNA barcoding is currently a widely used and effective tool that enables rapid
and accurate identification of plant species; however, none of the available loci work across …

NOVOPlasty: de novo assembly of organelle genomes from whole genome data

N Dierckxsens, P Mardulyn, G Smits - Nucleic acids research, 2017 - academic.oup.com
The evolution in next-generation sequencing (NGS) technology has led to the development
of many different assembly algorithms, but few of them focus on assembling the organelle …

Genomics of crop wild relatives: expanding the gene pool for crop improvement

M Brozynska, A Furtado… - Plant biotechnology journal, 2016 - Wiley Online Library
Plant breeders require access to new genetic diversity to satisfy the demands of a growing
human population for more food that can be produced in a variable or changing climate and …

Genome skimming for next-generation biodiversity analysis

S Dodsworth - Trends in Plant Science, 2015 - cell.com
High-throughput sequencing technologies have revolutionised the ease with which genomic
data can be obtained for any plant species, from trees to bryophytes, regardless of …

Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

K Kim, SC Lee, J Lee, Y Yu, K Yang, BS Choi, HJ Koh… - Scientific reports, 2015 - nature.com
Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary
sequences used to understand plant diversity and evolution. We introduce a high …

Using nuclear gene data for plant phylogenetics: Progress and prospects II. Nextgen approaches

EA Zimmer, J Wen - Journal of Systematics and Evolution, 2015 - Wiley Online Library
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …

Role of genomics in promoting the utilization of plant genetic resources in genebanks

PW Wambugu, MN Ndjiondjop… - Briefings in functional …, 2018 - academic.oup.com
Global efforts have seen the world's plant genetic resources (PGRs) conserved in about
1625 germ plasm repositories. Utility of these resources is important in increasing the …

Complete Chloroplast Genome Sequence of Tartary Buckwheat (Fagopyrum tataricum) and Comparative Analysis with Common Buckwheat (F. esculentum)

KS Cho, BK Yun, YH Yoon, SY Hong, M Mekapogu… - PLoS …, 2015 - journals.plos.org
We report the chloroplast (cp) genome sequence of tartary buckwheat (Fagopyrum
tataricum) obtained by next-generation sequencing technology and compared this with the …

Comparative Analyses of Five Complete Chloroplast Genomes from the Genus Pterocarpus (Fabacaeae)

Z Hong, Z Wu, K Zhao, Z Yang, N Zhang, J Guo… - International Journal of …, 2020 - mdpi.com
Pterocarpus is a genus of trees mainly distributed in tropical Asia, Africa, and South America.
Some species of Pterocarpus are rosewood tree species, having important economic value …