WFA-GPU: gap-affine pairwise read-alignment using GPUs
Q Aguado-Puig, M Doblas, C Matzoros… - …, 2023 - academic.oup.com
Motivation Advances in genomics and sequencing technologies demand faster and more
scalable analysis methods that can process longer sequences with higher accuracy …
scalable analysis methods that can process longer sequences with higher accuracy …
Genpip: In-memory acceleration of genome analysis via tight integration of basecalling and read mapping
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …
that can sequence long fragments of a genome into raw electrical signals at low cost …
WFA-GPU: Gap-affine pairwise alignment using GPUs
Motivation Advances in genomics and sequencing technologies demand faster and more
scalable analysis methods that can process longer sequences with higher accuracy …
scalable analysis methods that can process longer sequences with higher accuracy …
RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes
Nanopore sequencers generate electrical raw signals in real-time while sequencing long
genomic strands. These raw signals can be analyzed as they are generated, providing an …
genomic strands. These raw signals can be analyzed as they are generated, providing an …
GateSeeder: Near-memory CPU-FPGA Acceleration of Short and Long Read Mapping
Motivation: Read mapping is a computationally expensive process and a major bottleneck in
genomics analyses. The performance of read mapping is mainly limited by the performance …
genomics analyses. The performance of read mapping is mainly limited by the performance …
Accelerating pairwise sequence alignment on GPUs using the Wavefront Algorithm
Q Aguado Puig - 2022 - upcommons.upc.edu
Advances in genomics and sequencing technologies demand faster and more scalable
analysis methods that can process longer sequences with higher accuracy. However …
analysis methods that can process longer sequences with higher accuracy. However …