Autophagy and cancer drug resistance in dialogue: pre-clinical and clinical evidence

Y Qin, M Ashrafizadeh, V Mongiardini, B Grimaldi… - Cancer letters, 2023 - Elsevier
The emergence of drug resistance is a major challenge for oncologists. Resistance can be
categorized as acquired or intrinsic; the alteration of several biological mechanisms …

Discovery and ranking of the most robust prognostic biomarkers in serous ovarian cancer

B Győrffy - Geroscience, 2023 - Springer
Progress in ovarian cancer treatment lags behind other tumor types. With diagnosis usually
at an advanced stage, there is a high demand for reliable prognostic biomarkers capable of …

Aberrant DNA methylation impacts gene expression and prognosis in breast cancer subtypes

B Győrffy, G Bottai, T Fleischer… - … journal of cancer, 2016 - Wiley Online Library
DNA methylation has a substantial impact on gene expression, affecting the prognosis of
breast cancer (BC) patients dependent on molecular subtypes. In this study, we investigated …

[HTML][HTML] Survival analysis across the entire transcriptome identifies biomarkers with the highest prognostic power in breast cancer

B Győrffy - Computational and structural biotechnology journal, 2021 - Elsevier
Introduction Extensive research is directed to uncover new biomarkers capable to stratify
breast cancer patients into clinically relevant cohorts. However, the overall performance …

TNMplot. com: a web tool for the comparison of gene expression in normal, tumor and metastatic tissues

Á Bartha, B Győrffy - International journal of molecular sciences, 2021 - mdpi.com
Genes showing higher expression in either tumor or metastatic tissues can help in better
understanding tumor formation and can serve as biomarkers of progression or as potential …

ROCplot. org: Validating predictive biomarkers of chemotherapy/hormonal therapy/anti‐HER2 therapy using transcriptomic data of 3,104 breast cancer patients

JT Fekete, B Győrffy - International journal of cancer, 2019 - Wiley Online Library
Systemic therapy of breast cancer can include chemotherapy, hormonal therapy and
targeted therapy. Prognostic biomarkers are able to predict survival and predictive …

Inconsistency in large pharmacogenomic studies

B Haibe-Kains, N El-Hachem, NJ Birkbak, AC Jin… - Nature, 2013 - nature.com
Two large-scale pharmacogenomic studies were published recently in this journal. Genomic
data are well correlated between studies; however, the measured drug response data are …

Stemness of the hybrid epithelial/mesenchymal state in breast cancer and its association with poor survival

A Grosse-Wilde, A Fouquier d'Hérouël, E McIntosh… - PloS one, 2015 - journals.plos.org
Breast cancer stem cells (CSCs) are thought to drive recurrence and metastasis. Their
identity has been linked to the epithelial to mesenchymal transition (EMT) but remains highly …

Transcriptome‐level discovery of survival‐associated biomarkers and therapy targets in non‐small‐cell lung cancer

B Győrffy - British Journal of Pharmacology, 2024 - Wiley Online Library
Abstract Background and Purpose Survival rate of patients with lung cancer has increased
by over 60% in the recent two decades. With longer survival, the identification of genes …

Telomeric allelic imbalance indicates defective DNA repair and sensitivity to DNA-damaging agents

NJ Birkbak, ZC Wang, JY Kim, AC Eklund, Q Li, R Tian… - Cancer discovery, 2012 - AACR
DNA repair competency is one determinant of sensitivity to certain chemotherapy drugs,
such as cisplatin. Cancer cells with intact DNA repair can avoid the accumulation of genome …