Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants
HJ Wu, ZM Wang, M Wang, XJ Wang - Plant physiology, 2013 - academic.oup.com
Target mimicry is a recently identified regulatory mechanism for microRNA (miRNA)
functions in plants in which the decoy RNAs bind to miRNAs via complementary sequences …
functions in plants in which the decoy RNAs bind to miRNAs via complementary sequences …
The functional scope of plant microRNA-mediated silencing
Deep sequencing has identified a complex set of plant miRNAs that potentially regulates
many target genes of high complementarity. Furthermore, the discovery that many plant …
many target genes of high complementarity. Furthermore, the discovery that many plant …
Finding microRNA targets in plants: current status and perspectives
MicroRNAs (miRNAs), a class of∼ 20–24 nt long non-coding RNAs, have critical roles in
diverse biological processes including development, proliferation, stress response, etc. With …
diverse biological processes including development, proliferation, stress response, etc. With …
Genome-wide identification of Brassica napus microRNAs and their targets in response to cadmium
ZS Zhou, JB Song, ZM Yang - Journal of experimental botany, 2012 - academic.oup.com
MicroRNAs (miRNAs) are a distinct class of small RNAs in plants that not only regulate
biological processes but also regulate response to environmental stresses. The toxic heavy …
biological processes but also regulate response to environmental stresses. The toxic heavy …
Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.)
Long noncoding RNA s (lnc RNA s) are transcripts of at least 200 bp in length, possess no
apparent coding capacity and are involved in various biological regulatory processes. Until …
apparent coding capacity and are involved in various biological regulatory processes. Until …
Global analysis of truncated RNA ends reveals new insights into ribosome stalling in plants
CY Hou, WC Lee, HC Chou, AP Chen, SJ Chou… - The Plant …, 2016 - academic.oup.com
High-throughput approaches for profiling the 5′ ends of RNA degradation intermediates on
a genome-wide scale are frequently applied to analyze and validate cleavage sites guided …
a genome-wide scale are frequently applied to analyze and validate cleavage sites guided …
A multi-omics study of the grapevine-downy mildew (Plasmopara viticola) pathosystem unveils a complex protein coding- and noncoding-based arms race during …
Fungicides are applied intensively to prevent downy mildew infections of grapevines (Vitis
vinifera) with high impact on the environment. In order to develop alternative strategies we …
vinifera) with high impact on the environment. In order to develop alternative strategies we …
sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software
Parallel analysis of RNA ends (PARE) is a technique utilizing high-throughput sequencing to
profile uncapped, mRNA cleavage or decay products on a genome-wide basis. Tools …
profile uncapped, mRNA cleavage or decay products on a genome-wide basis. Tools …
Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice
Background The inferior spikelets are defined to be those at portions where the grains
receive less photosynthetic products during the seed development. The typical inferior …
receive less photosynthetic products during the seed development. The typical inferior …
Identification of novel miRNAs from drought tolerant rice variety Nagina 22
MicroRNAs regulate a spectrum of developmental and biochemical processes in plants and
animals. Thus, knowledge of the entire miRNome is essential to understand the complete …
animals. Thus, knowledge of the entire miRNome is essential to understand the complete …