Preparation of proteins and peptides for mass spectrometry analysis in a bottom‐up proteomics workflow

RL Gundry, MY White, CI Murray… - Current protocols in …, 2010 - Wiley Online Library
This unit outlines the steps required to prepare a sample for MS analysis following protein
separation or enrichment by gel electrophoresis, liquid chromatography, and affinity capture …

Techniques for phosphopeptide enrichment prior to analysis by mass spectrometry

JD Dunn, GE Reid, ML Bruening - Mass spectrometry reviews, 2010 - Wiley Online Library
Mass spectrometry is the tool of choice to investigate protein phosphorylation, which plays a
vital role in cell regulation and diseases such as cancer. However, low abundances of …

The phosphoproteomics data explosion

S Lemeer, AJR Heck - Current opinion in chemical biology, 2009 - Elsevier
There are likely more than 500000 potential phosphorylation sites in a cellular proteome.
This dynamic phosphorylation is under tight control of a variety of kinases and …

Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum

THN Nguyen, L Brechenmacher, JT Aldrich… - Molecular & Cellular …, 2012 - ASBMB
Root hairs are single hair-forming cells on roots that function to increase root surface area,
enhancing water and nutrient uptake. In leguminous plants, root hairs also play a critical role …

Plant phosphoproteomics: an update

B Kersten, GK Agrawal, P Durek, J Neigenfind… - …, 2009 - Wiley Online Library
Phosphoproteomics involves identification of phosphoproteins, precise mapping, and
quantification of phosphorylation sites, and eventually, revealing their biological function. In …

[HTML][HTML] Control of nuclear receptor activities in metabolism by post-translational modifications

W Berrabah, P Aumercier, P Lefebvre, B Staels - FEBS letters, 2011 - Elsevier
Nuclear receptors (NRs) are molecular transducers of endocrine and dietary signals
allowing tissues to adapt their transcriptional responses to endogenous or exogenous cues …

A comparative study of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) versus SCX-IMAC-based methods for phosphopeptide isolation …

CS Gan, T Guo, H Zhang, SK Lim… - Journal of proteome …, 2008 - ACS Publications
Electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) has been introduced
recently for phosphopeptide enrichment. Here we compared ERLIC with the well …

Shotguns in the front line: phosphoproteomics in plants

H Nakagami, N Sugiyama, Y Ishihama… - Plant and cell …, 2012 - academic.oup.com
The emergence of 'shotgun proteomics' has paved the way for high-throughput proteome
analysis, by which thousands of proteins can be identified simultaneously from complex …

Differential phosphoproteomics of fibroblast growth factor signaling: identification of Src family kinase-mediated phosphorylation events

DL Cunningham, SMM Sweet, HJ Cooper… - Journal of proteome …, 2010 - ACS Publications
Activation of signal transduction by the receptor tyrosine kinase, fibroblast growth factor
receptor (FGFR), results in a cascade of protein− protein interactions that rely on the …

Extended coverage of singly and multiply phosphorylated peptides from a single titanium dioxide microcolumn

M Wakabayashi, Y Kyono, N Sugiyama… - Analytical …, 2015 - ACS Publications
We developed a novel approach to enlarge phosphoproteome coverage by selective elution
depending on the number of phosphoryl group of peptides from a single titanium dioxide …