Optimal control for sampling the transition path process and estimating rates
J Yuan, A Shah, C Bentz, M Cameron - Communications in Nonlinear …, 2024 - Elsevier
Many processes in nature such as conformal changes in biomolecules and clusters of
interacting particles, genetic switches, mechanical or electromechanical oscillators with …
interacting particles, genetic switches, mechanical or electromechanical oscillators with …
A data driven method for computing quasipotentials
B Lin, Q Li, W Ren - Mathematical and Scientific Machine …, 2022 - proceedings.mlr.press
The quasipotential is a natural generalization of the concept of energy functions to non-
equilibrium systems. In the analysis of rare events in stochastic dynamics, it plays a central …
equilibrium systems. In the analysis of rare events in stochastic dynamics, it plays a central …
Ritz method for transition paths and quasipotentials of rare diffusive events
L Kikuchi, R Singh, ME Cates, R Adhikari - Physical Review Research, 2020 - APS
The probability of trajectories of weakly diffusive processes to remain in the tubular
neighborhood of a smooth path is given by the Freidlin-Wentzell-Graham theory of large …
neighborhood of a smooth path is given by the Freidlin-Wentzell-Graham theory of large …
Controlling mean exit time of stochastic dynamical systems based on quasipotential and machine learning
Y Li, S Yuan, S Xu - Communications in Nonlinear Science and Numerical …, 2023 - Elsevier
The mean exit time escaping basin of attraction in the presence of white noise is of practical
importance in various scientific fields. In this work, we propose a strategy to control mean …
importance in various scientific fields. In this work, we propose a strategy to control mean …
Numerical computation of effective thermal equilibria in stochastically switching Langevin systems
BL Walker, KA Newhall - Physical Review E, 2022 - APS
Stochastically switching force terms appear frequently in models of biological systems under
the action of active agents such as proteins. The interaction of switching forces and …
the action of active agents such as proteins. The interaction of switching forces and …
Sparse identification of quasipotentials via a combined data-driven method
B Lin, P Belardinelli - arXiv preprint arXiv:2407.05050, 2024 - arxiv.org
The quasipotential function allows for comprehension and prediction of the escape
mechanisms from metastable states in nonlinear dynamical systems. This function acts as a …
mechanisms from metastable states in nonlinear dynamical systems. This function acts as a …
[HTML][HTML] 基于大偏差理论的随机动力学研究
朱金杰, 陈朕, 孔琛, 刘先斌 - 力学进展, 2020 - lxjz.cstam.org.cn
本文介绍了大偏差理论的基本思想, 基本概念以及大偏差理论在离出问题研究中的应用.
本文评述了有关离出问题的三个重要指标: 平均首次离出时间, 离出位置分布和最优离出路径 …
本文评述了有关离出问题的三个重要指标: 平均首次离出时间, 离出位置分布和最优离出路径 …
An Efficient Jet Marcher for Computing the Quasipotential for 2D SDEs: Enhancing Accuracy and Efficiency of Quasipotential Solvers
N Paskal, M Cameron - Journal of Scientific Computing, 2022 - Springer
We present a new algorithm, the efficient jet marching method (EJM), for computing the
quasipotential and its gradient for two-dimensional SDEs. The quasipotential is a potential …
quasipotential and its gradient for two-dimensional SDEs. The quasipotential is a potential …
Jet marching methods for solving the eikonal equation
SF Potter, MK Cameron - SIAM Journal on Scientific Computing, 2021 - SIAM
We develop a family of compact high-order semi-Lagrangian label-setting methods for
solving the eikonal equation. These solvers march the total 1-jet of the eikonal, and use …
solving the eikonal equation. These solvers march the total 1-jet of the eikonal, and use …
Quasipotentials for coupled escape problems and the gate-height bifurcation
P Ashwin, J Creaser, K Tsaneva-Atanasova - Physical Review E, 2023 - APS
The escape statistics of a gradient dynamical system perturbed by noise can be estimated
using properties of the associated potential landscape. More generally, the Freidlin and …
using properties of the associated potential landscape. More generally, the Freidlin and …