Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
D Larivière, L Abueg, N Brajuka, C Gallardo-Alba… - Nature …, 2024 - nature.com
The Earth BioGenome Project aims to produce reference genomes for all~ 1.8 million known
eukaryotic species over the next decade 1–4. Achieving this goal will require the current …
eukaryotic species over the next decade 1–4. Achieving this goal will require the current …
[HTML][HTML] Automated discovery of container executables
Linux container technologies such as Docker and Singularity offer encapsulated
environments for easy execution of software. In high performance computing, this is …
environments for easy execution of software. In high performance computing, this is …
PathoGFAIR: a collection of FAIR and adaptable (meta) genomics workflows for (foodborne) pathogens detection and tracking
Background: Food contamination by pathogens poses a global health threat, affecting an
estimated 600 million people annually. During a foodborne outbreak investigation …
estimated 600 million people annually. During a foodborne outbreak investigation …
KegAlign: Optimizing pairwise alignments with diagonal partitioning
B Gulhan, R Burhans, R Harris, M Kandemir… - bioRxiv, 2024 - biorxiv.org
Our ability to generate sequencing data and assemble it into high quality complete genomes
has rapidly advanced in recent years. These data promise to advance our understanding of …
has rapidly advanced in recent years. These data promise to advance our understanding of …
Conda, Container and Bots: How to Build and Maintain Tool Dependencies in Workflows and Training Materials
P Zierep, SK Srikakulam, S Schaaf… - Proceedings of the …, 2023 - tib-op.org
The lifecycle of scientific tools comprises the creation of code releases, packages and
containers which can be deployed into cloud platforms, such as the Galaxy Project, where …
containers which can be deployed into cloud platforms, such as the Galaxy Project, where …