Bioinformatic challenges for DNA metabarcoding of plants and animals

E Coissac, T Riaz, N Puillandre - Molecular ecology, 2012 - Wiley Online Library
Almost all empirical studies in ecology have to identify the species involved in the ecological
process under examination. DNA metabarcoding, which couples the principles of DNA …

DNA barcoding of marine metazoa

A Bucklin, D Steinke… - Annual review of marine …, 2011 - annualreviews.org
More than 230,000 known species representing 31 metazoan phyla populate the world's
oceans. Perhaps another 1,000,000 or more species remain to be discovered. There is …

Sequence-based species delimitation for the DNA taxonomy of undescribed insects

J Pons, TG Barraclough, J Gomez-Zurita… - Systematic …, 2006 - academic.oup.com
Cataloging the very large number of undescribed species of insects could be greatly
accelerated by automated DNA based approaches, but procedures for large-scale species …

DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success

R Meier, K Shiyang, G Vaidya, PKL Ng - Systematic biology, 2006 - academic.oup.com
DNA barcoding and DNA taxonomy have recently been proposed as solutions to the crisis of
taxonomy and received significant attention from scientific journals, grant agencies, natural …

Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory

DR Vieites, KC Wollenberg… - Proceedings of the …, 2009 - National Acad Sciences
Amphibians are in decline worldwide. However, their patterns of diversity, especially in the
tropics, are not well understood, mainly because of incomplete information on taxonomy and …

[HTML][HTML] Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

RH Nilsson, M Ryberg, E Kristiansson, K Abarenkov… - PloS one, 2006 - journals.plos.org
Background DNA sequences are increasingly seen as one of the primary information
sources for species identification in many organism groups. Such approaches, popularly …

Towards writing the encyclopaedia of life: an introduction to DNA barcoding

V Savolainen, RS Cowan… - … of the Royal …, 2005 - royalsocietypublishing.org
An international consortium of major natural history museums, herbaria and other
organizations has launched an ambitious project, the 'Barcode of Life Initiative', to promote a …

Integrating DNA barcode data and taxonomic practice: determination, discovery, and description

PZ Goldstein, R DeSalle - Bioessays, 2011 - Wiley Online Library
DNA barcodes, like traditional sources of taxonomic information, are potentially powerful
heuristics in the identification of described species but require mindful analytical …

Deciphering amphibian diversity through DNA barcoding: chances and challenges

M Vences, M Thomas, RM Bonett… - … Transactions of the …, 2005 - royalsocietypublishing.org
Amphibians globally are in decline, yet there is still a tremendous amount of unrecognized
diversity, calling for an acceleration of taxonomic exploration. This process will be greatly …

A genomic perspective on the shortcomings of mitochondrial DNA for “barcoding” identification

D Rubinoff, S Cameron, K Will - Journal of heredity, 2006 - academic.oup.com
Approximately 600-bp sequences of mitochondrial DNA (mtDNA) have been designated as
“DNA barcodes” and have become one of the most contentious and animated issues in the …