[HTML][HTML] Prediction and estimation of effective population size

J Wang, E Santiago, A Caballero - Heredity, 2016 - nature.com
Effective population size (N e) is a key parameter in population genetics. It has important
applications in evolutionary biology, conservation genetics and plant and animal breeding …

How well can captive breeding programs conserve biodiversity? A review of salmonids

DJ Fraser - Evolutionary Applications, 2008 - Wiley Online Library
Captive breeding programs are increasingly being initiated to prevent the imminent
extinction of endangered species and/or populations. But how well can they conserve …

Inbreeding and runs of homozygosity: A possible solution to an old problem

I Curik, M Ferenčaković, J Sölkner - Livestock science, 2014 - Elsevier
Quantifying human, plant and livestock inbreeding has been an important goal of
evolutionary biologists and agricultural scientists for nearly a century, and methods to do so …

A note on ENDOG: a computer program for analysing pedigree information

JP Gutiérrez, F Goyache - Journal of Animal Breeding and …, 2005 - Wiley Online Library
The aim of this note is to describe the program endog (v. 3.0). The program handles
pedigree information to conduct several demographic and genetic analyses including:(a) the …

Performance of genomic selection in mice

A Legarra, C Robert-Granié, E Manfredi, JM Elsen - Genetics, 2008 - academic.oup.com
Selection plans in plant and animal breeding are driven by genetic evaluation. Recent
developments suggest using massive genetic marker information, known as “genomic …

Genomic inbreeding estimation in small populations: evaluation of runs of homozygosity in three local dairy cattle breeds

S Mastrangelo, M Tolone, R Di Gerlando, L Fontanesi… - Animal, 2016 - cambridge.org
In the local breeds with small population size, one of the most important problems is the
increase of inbreeding coefficient (F). High levels of inbreeding lead to reduced genetic …

Characterization and conservation of genetic diversity in subdivided populations

MA Toro, A Caballero - … of the Royal Society B: Biological …, 2005 - royalsocietypublishing.org
We review the available tools for analysing genetic diversity in conservation programmes of
subdivided populations. Ways for establishing conservation priorities have been developed …

Molecular characterization of breeds and its use in conservation

MA Toro, J Fernández, A Caballero - Livestock Science, 2009 - Elsevier
The conservation of farm animal resources is important for coping with future breeding
needs and for facilitating the sustainable use of marginal areas. The increasing availability …

MolKin v2. 0: a computer program for genetic analysis of populations using molecular coancestry information

JP Gutiérrez, LJ Royo, I Álvarez… - Journal of Heredity, 2005 - academic.oup.com
Recently different studies have formalized the way in which it is possible to obtain
coancestry coefficients from molecular information (Caballero and Toro 2002; Eding and …

Estimation of effective population size from the rate of coancestry in pedigreed populations

I Cervantes, F Goyache, A Molina… - Journal of animal …, 2011 - Wiley Online Library
We introduce a simple method to estimate effective population size from increase in
coancestry (Δcjk) for all pairs of individuals j and k in a reference subpopulation. An increase …