Pharmacometabonomics: data processing and statistical analysis
J Fu, Y Zhang, J Liu, X Lian, J Tang… - Briefings in …, 2021 - academic.oup.com
Individual variations in drug efficacy, side effects and adverse drug reactions are still
challenging that cannot be ignored in drug research and development. The aim of …
challenging that cannot be ignored in drug research and development. The aim of …
[HTML][HTML] Statistical and computational methods for integrating microbiome, host genomics, and metabolomics data
Large-scale microbiome studies are progressively utilizing multiomics designs, which
include the collection of microbiome samples together with host genomics and …
include the collection of microbiome samples together with host genomics and …
[HTML][HTML] Discrimination of missing data types in metabolomics data based on particle swarm optimization algorithm and XGBoost model
Y Yuan, J Du, J Luo, Y Zhu, Q Huang, M Zhang - Scientific Reports, 2024 - nature.com
In the field of data analysis, it is often faced with a large number of missing values, especially
in metabolomics data, this problem is more prominent. Data imputation is a common method …
in metabolomics data, this problem is more prominent. Data imputation is a common method …
Unconjugated bilirubin is associated with protection from early-life wheeze and childhood asthma
Background Wheeze and allergic sensitization are the strongest early-life predictors of
childhood asthma development; the molecular origins of these early-life phenotypes are …
childhood asthma development; the molecular origins of these early-life phenotypes are …
Discovering metabolite quantitative trait loci in asthma using an isolated population
RK Johnson, T Brunetti, K Quinn, K Doenges… - Journal of Allergy and …, 2022 - Elsevier
Background Integration of metabolomics with genetics may advance understanding of
disease pathogenesis but has been underused in asthma genetic studies. Objective We …
disease pathogenesis but has been underused in asthma genetic studies. Objective We …
[HTML][HTML] MIRTH: Metabolite imputation via rank-transformation and harmonization
Out of the thousands of metabolites in a given specimen, most metabolomics experiments
measure only hundreds, with poor overlap across experimental platforms. Here, we describe …
measure only hundreds, with poor overlap across experimental platforms. Here, we describe …
High-dimensional logistic regression with missing data: Imputation, regularization, and universality
KA Verchand, A Montanari - arXiv preprint arXiv:2410.01093, 2024 - arxiv.org
We study high-dimensional, ridge-regularized logistic regression in a setting in which the
covariates may be missing or corrupted by additive noise. When both the covariates and the …
covariates may be missing or corrupted by additive noise. When both the covariates and the …
Estimation beyond Missing (Completely) at Random
We study the effects of missingness on the estimation of population parameters. Moving
beyond restrictive missing completely at random (MCAR) assumptions, we first formulate a …
beyond restrictive missing completely at random (MCAR) assumptions, we first formulate a …
[HTML][HTML] Plasma 25-hydroxyvitamin D concentrations are associated with polyunsaturated fatty acid metabolites in young children: Results from the vitamin d antenatal …
Vitamin D deficiency contributes to a multitude of health conditions, but its biological
mechanisms are not adequately understood. Untargeted metabolomics offers the …
mechanisms are not adequately understood. Untargeted metabolomics offers the …
A statistical framework for GWAS of high dimensional phenotypes using summary statistics, with application to metabolite GWAS
The recent explosion of genetic and high dimensional biobank and'omic'data has provided
researchers with the opportunity to investigate the shared genetic origin (pleiotropy) of …
researchers with the opportunity to investigate the shared genetic origin (pleiotropy) of …