CRISPR genotyping methods: tracing the evolution from spoligotyping to machine learning

P Muzyukina, O Soutourina - Biochimie, 2024 - Elsevier
CRISPR (clustered regularly interspaced short palindromic r epeats)-Cas (CRISPR-
associated) systems provide prokaryotes with adaptive immunity defenses against foreign …

The CRISPR-Cas system in Enterobacteriaceae

L Medina-Aparicio, S Davila… - Pathogens and …, 2018 - academic.oup.com
In nature, microorganisms are constantly exposed to multiple viral infections and thus have
developed many strategies to survive phage attack and invasion by foreign DNA. One of …

Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum

C Hidalgo-Cantabrana, AB Crawley… - Frontiers in …, 2017 - frontiersin.org
Diverse CRISPR-Cas systems provide adaptive immunity in many bacteria and most
archaea, via a DNA-encoded, RNA-mediated, nucleic-acid targeting mechanism. Over time …

Reemergence of human plague in Yunnan, China in 2016

L Shi, G Yang, Z Zhang, L Xia, Y Liang, H Tan, J He… - PloS one, 2018 - journals.plos.org
The third plague pandemic originated from Yunnan Province, China in the middle of the 19th
century. The last human plague epidemic in Yunnan occurred from 1986–2005. On June 6 …

CRISPR Diversity and Microevolution in Clostridium difficile

JM Andersen, M Shoup, C Robinson… - Genome biology and …, 2016 - academic.oup.com
Virulent strains of Clostridium difficile have become a global health problem associated with
morbidity and mortality. Traditional typing methods do not provide ideal resolution to track …

CRISPR genotyping as complementary tool for epidemiological surveillance of Erwinia amylovora outbreaks

RJ Mendes, JP Luz, C Santos, F Tavares - PLoS One, 2021 - journals.plos.org
Fire blight is a destructive plant disease caused by Erwinia amylovora affecting pome fruit
trees, and responsible for large yield declines, long phytosanitary confinements, and high …

Exploring Diversity and Origins of Streptomycin-Resistant Erwinia amylovora Isolates in New York Through CRISPR Spacer Arrays

KA Tancos, KD Cox - Plant Disease, 2016 - Am Phytopath Society
Streptomycin is the most effective and widely used chemical control in the eastern United
States for blossom blight of apple caused by Erwinia amylovora; however, resistance to this …

Whole genome analysis of Yersinia ruckeri isolated over 27 years in Australia and New Zealand reveals geographical endemism over multiple lineages and recent …

AC Barnes, J Delamare-Deboutteville… - Microbial …, 2016 - microbiologyresearch.org
Yersinia ruckeri is a salmonid pathogen with widespread distribution in cool-temperate
waters including Australia and New Zealand, two isolated environments with recently …

[HTML][HTML] A review of methods for subtyping Yersinia pestis: from phenotypes to whole genome sequencing

AJ Vogler, P Keim, DM Wagner - Infection, Genetics and Evolution, 2016 - Elsevier
Numerous subtyping methods have been applied to Yersinia pestis with varying success.
Here, we review the various subtyping methods that have been applied to Y. pestis and their …

[HTML][HTML] A concise review on development of probiotics from Lactobacillus using CRISPR-Cas Technology of Gene Editing

S Vaid, VK Pandey, R Singh, AH Dar, R Shams… - Food Chemistry …, 2022 - Elsevier
Immunological nourishment is the most active part of our health system that plays a crucial
role in the human body's functioning. With the hectic rush of life running at present time …