Evolutionary profiles and complex admixture landscape in East Asia: New insights from modern and ancient Y chromosome variation perspectives

Z Wang, M Wang, L Hu, G He, S Nie - Heliyon, 2024 - cell.com
Human Y-chromosomes are characterized by nonrecombination and uniparental
inheritance, carrying traces of human history evolution and admixture. Large-scale …

T2T-YAO: a telomere-to-telomere assembled diploid reference genome for Han Chinese

Y He, Y Chu, S Guo, J Hu, R Li, Y Zheng… - Genomics …, 2023 - academic.oup.com
Since its initial release in 2001, the human reference genome has undergone continuous
improvement in quality, and the recently released telomere-to-telomere (T2T) version—T2T …

Experimental and Computational Approaches to Measure Telomere Length: Recent Advances and Future Directions

A Ferrer, ZD Stephens, JPA Kocher - Current Hematologic Malignancy …, 2023 - Springer
Abstract Purpose of Review The length of telomeres, protective structures at the
chromosome ends, is a well-established biomarker for pathological conditions including …

Exploring gene content with pangene graphs

H Li, M Marin, MR Farhat - Bioinformatics, 2024 - academic.oup.com
Motivation The gene content regulates the biology of an organism. It varies between species
and between individuals of the same species. Although tools have been developed to …

Telomere-to-telomere genome assembly of a male goat reveals variants associated with cashmere traits

H Wu, LY Luo, YH Zhang, CY Zhang, JH Huang… - Nature …, 2024 - nature.com
A complete goat (Capra hircus) reference genome enhances analyses of genetic variation,
thus providing insights into domestication and selection in goats and related species. Here …

Telomere-to-telomere phased genome assembly using HERRO-corrected simplex Nanopore reads

D Stanojević, D Lin, S Nurk, P Florez de Sessions… - bioRxiv, 2024 - biorxiv.org
Telomere-to-telomere phased assemblies have become the norm in genomics. To achieve
these for diploid and even polyploid genomes, the contemporary approach involves a …

Telomere-to-telomere assembly by preserving contained reads

SS Kamath, M Bindra, D Pal, C Jain - Genome Research, 2024 - genome.cshlp.org
Automated telomere-to-telomere (T2T) de novo assembly of diploid and polyploid genomes
remains a formidable task. A string graph is a commonly used assembly graph …

GCI: a continuity inspector for complete genome assembly

Q Chen, C Yang, G Zhang, D Wu - Bioinformatics, 2024 - academic.oup.com
Motivation Recent advances in long-read sequencing technologies have significantly
facilitated the production of high-quality genome assembly. The telomere-to-telomere (T2T) …

The near-complete genome assembly of hexaploid wild oat reveals its genome evolution and divergence with cultivated oats

Q He, W Li, Y Miao, Y Wang, N Liu, J Liu, T Li, Y Xiao… - Nature Plants, 2024 - nature.com
Avena sterilis, the ancestral species of cultivated oats, is a valuable genetic resource for oat
improvement. Here we generated a near-complete 10.99 Gb A. sterilis genome and a high …

[HTML][HTML] 牦牛基因组拷贝数变异研究进展

徐东辉, 徐宇辉, 李瑞哲, 成海建, 马志杰 - 畜牧兽医学报, 2024 - html.rhhz.net
拷贝数变异(copy number variation, CNV) 是基因组结构变异(structural variation, SV)
的重要组成部分. 与SNP (single nucleotide polymorphism) 相比, CNV 显示出更丰富的复杂 …