Quantitative mass spectrometry in proteomics: a critical review

M Bantscheff, M Schirle, G Sweetman, J Rick… - Analytical and …, 2007 - Springer
The quantification of differences between two or more physiological states of a biological
system is among the most important but also most challenging technical tasks in proteomics …

Imaging mass spectrometry

LA McDonnell, RMA Heeren - Mass spectrometry reviews, 2007 - Wiley Online Library
Imaging mass spectrometry combines the chemical specificity and parallel detection of mass
spectrometry with microscopic imaging capabilities. The ability to simultaneously obtain …

Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS

A Thompson, J Schäfer, K Kuhn, S Kienle… - Analytical …, 2003 - ACS Publications
A novel MS/MS-based analysis strategy using isotopomer labels, referred to as “tandem
mass tags”(TMTs), for the accurate quantification of peptides and proteins is described. The …

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

MP Washburn, D Wolters, JR Yates - Nature biotechnology, 2001 - nature.com
We describe a largely unbiased method for rapid and large-scale proteome analysis by
multidimensional liquid chromatography, tandem mass spectrometry, and database …

Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research

S Wiese, KA Reidegeld, HE Meyer, B Warscheid - Proteomics, 2007 - Wiley Online Library
A novel, MS‐based approach for the relative quantification of proteins, relying on the
derivatization of primary amino groups in intact proteins using isobaric tag for relative and …

High-throughput proteomics

Z Zhang, S Wu, DL Stenoien… - Annual review of …, 2014 - annualreviews.org
Mass spectrometry (MS)–based high-throughput proteomics is the core technique for large-
scale protein characterization. Due to the extreme complexity of proteomes, sophisticated …

Mass spectrometry in proteomics

R Aebersold, DR Goodlett - Chemical reviews, 2001 - ACS Publications
Proteomics can be viewed as an experimental approach to explain the information
contained in genomic sequences in terms of the structure, function, and control of biological …

Recent advances (2019–2021) of capillary electrophoresis‐mass spectrometry for multilevel proteomics

D Chen, EN McCool, Z Yang, X Shen… - Mass Spectrometry …, 2023 - Wiley Online Library
Multilevel proteomics aims to delineate proteins at the peptide (bottom‐up proteomics),
proteoform (top‐down proteomics), and protein complex (native proteomics) levels. Capillary …

Proteomics: the move to mixtures

J Peng, SP Gygi - Journal of mass spectrometry, 2001 - Wiley Online Library
Proteomics can be defined as the systematic analysis of proteins for their identity, quantity
and function. In contrast to a cell's static genome, the proteome is both complex and …

Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics

SJ Callister, RC Barry, JN Adkins… - Journal of proteome …, 2006 - ACS Publications
Central tendency, linear regression, locally weighted regression, and quantile techniques
were investigated for normalization of peptide abundance measurements obtained from …