Quantifying behavior to understand the brain

TD Pereira, JW Shaevitz, M Murthy - Nature neuroscience, 2020 - nature.com
Over the past years, numerous methods have emerged to automate the quantification of
animal behavior at a resolution not previously imaginable. This has opened up a new field of …

How our understanding of memory replay evolves

ZS Chen, MA Wilson - Journal of Neurophysiology, 2023 - journals.physiology.org
Memory reactivations and replay, widely reported in the hippocampus and cortex across
species, have been implicated in memory consolidation, planning, and spatial and skill …

Wave-like dopamine dynamics as a mechanism for spatiotemporal credit assignment

AA Hamid, MJ Frank, CI Moore - Cell, 2021 - cell.com
Significant evidence supports the view that dopamine shapes learning by encoding reward
prediction errors. However, it is unknown whether striatal targets receive tailored dopamine …

Rastermap: a discovery method for neural population recordings

C Stringer, L Zhong, A Syeda, F Du, M Kesa… - Nature …, 2024 - nature.com
Neurophysiology has long progressed through exploratory experiments and chance
discoveries. Anecdotes abound of researchers listening to spikes in real time and noticing …

Cortical regulation of two-stage rapid eye movement sleep

Y Dong, J Li, M Zhou, Y Du, D Liu - Nature neuroscience, 2022 - nature.com
Rapid eye movement (REM) sleep is a sleep state characterized by skeletal muscle
paralysis and cerebral cortical activation. Yet, global cortical dynamics and their role in …

The why and how of nonnegative matrix factorization

N Gillis - … , optimization, kernels, and support vector machines, 2014 - books.google.com
Nonnegative matrix factorization (NMF) has become a widely used tool for the analysis of
high-dimensional data as it automatically extracts sparse and meaningful features from a set …

A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging

P Rupprecht, S Carta, A Hoffmann, M Echizen… - Nature …, 2021 - nature.com
Inference of action potentials ('spikes') from neuronal calcium signals is complicated by the
scarcity of simultaneous measurements of action potentials and calcium signals ('ground …

Prefrontal cortex exhibits multidimensional dynamic encoding during decision-making

MC Aoi, V Mante, JW Pillow - Nature neuroscience, 2020 - nature.com
Recent work has suggested that the prefrontal cortex (PFC) plays a key role in context-
dependent perceptual decision-making. In this study, we addressed that role using a new …

Ecological dynamics of the gut microbiome in response to dietary fiber

H Liu, C Liao, L Wu, J Tang, J Chen, C Lei… - The ISME …, 2022 - academic.oup.com
Dietary fibers are generally thought to benefit intestinal health. Their impacts on the
composition and metabolic function of the gut microbiome, however, vary greatly across …

[图书][B] Nonnegative matrix factorization

N Gillis - 2020 - SIAM
Identifying the underlying structure of a data set and extracting meaningful information is a
key problem in data analysis. Simple and powerful methods to achieve this goal are linear …