Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea
Y Liu, WB Whitman - Annals of the new York Academy of …, 2008 - Wiley Online Library
Although of limited metabolic diversity, methanogenic archaea or methanogens possess
great phylogenetic and ecological diversity. Only three types of methanogenic pathways are …
great phylogenetic and ecological diversity. Only three types of methanogenic pathways are …
Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales
JA Leigh, SV Albers, H Atomi… - FEMS microbiology …, 2011 - academic.oup.com
The tree of life is split into three main branches: eukaryotes, bacteria, and archaea. Our
knowledge of eukaryotic and bacteria cell biology has been built on a foundation of studies …
knowledge of eukaryotic and bacteria cell biology has been built on a foundation of studies …
Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology
The genetic code, initially thought to be universal and immutable, is now known to contain
many variations, including biased codon usage, codon reassignment, ambiguous decoding …
many variations, including biased codon usage, codon reassignment, ambiguous decoding …
Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages
Asgardarchaeota have been proposed as the closest living relatives to eukaryotes, and a
total of 72 metagenome-assembled genomes (MAGs) representing six primary lineages in …
total of 72 metagenome-assembled genomes (MAGs) representing six primary lineages in …
The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine
MA Gaston, L Zhang, KB Green-Church, JA Krzycki - Nature, 2011 - nature.com
Pyrrolysine, the twenty-second amino acid found to be encoded in the natural genetic
code,,,, is necessary for all of the known pathways by which methane is formed from …
code,,,, is necessary for all of the known pathways by which methane is formed from …
Selenocysteine, pyrrolysine, and the unique energy metabolism of methanogenic archaea
M Rother, JA Krzycki - Archaea, 2010 - Wiley Online Library
Methanogenic archaea are a group of strictly anaerobic microorganisms characterized by
their strict dependence on the process of methanogenesis for energy conservation. Among …
their strict dependence on the process of methanogenesis for energy conservation. Among …
The direct genetic encoding of pyrrolysine
JA Krzycki - Current Opinion in Microbiology, 2005 - Elsevier
Pyrrolysine is an amino acid encoded by the amber codon in genes required for
methylamine utilization by members of the Methanosarcinaceae. Pyrrolysine and …
methylamine utilization by members of the Methanosarcinaceae. Pyrrolysine and …
Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea
A modified base at the first (wobble) position of some tRNA anticodons is critical for
deciphering the genetic code. In eukaryotes and eubacteria, AUA codons are decoded by …
deciphering the genetic code. In eukaryotes and eubacteria, AUA codons are decoded by …
Functional context, biosynthesis, and genetic encoding of pyrrolysine
MA Gaston, R Jiang, JA Krzycki - Current opinion in microbiology, 2011 - Elsevier
In Methanosarcina spp., amber codons in methylamine methyltransferase genes are
translated as the 22nd amino acid, pyrrolysine. The responsible pyl genes plus amber …
translated as the 22nd amino acid, pyrrolysine. The responsible pyl genes plus amber …
Engineering Pyrrolysine Systems for Genetic Code Expansion and Reprogramming
DL Dunkelmann, JW Chin - Chemical Reviews, 2024 - ACS Publications
Over the past 16 years, genetic code expansion and reprogramming in living organisms has
been transformed by advances that leverage the unique properties of pyrrolysyl-tRNA …
been transformed by advances that leverage the unique properties of pyrrolysyl-tRNA …