Evolution and diversity of transposable elements in vertebrate genomes

CG Sotero-Caio, RN Platt, A Suh… - Genome biology and …, 2017 - academic.oup.com
Transposable elements (TEs) are selfish genetic elements that mobilize in genomes via
transposition or retrotransposition and often make up large fractions of vertebrate genomes …

What have we learned from the first 500 avian genomes?

GA Bravo, CJ Schmitt… - Annual Review of Ecology …, 2021 - annualreviews.org
The increased capacity of DNA sequencing has significantly advanced our understanding of
the phylogeny of birds and the proximate and ultimate mechanisms molding their genomic …

Microchromosomes are building blocks of bird, reptile, and mammal chromosomes

PD Waters, HR Patel, A Ruiz-Herrera… - Proceedings of the …, 2021 - National Acad Sciences
Microchromosomes, once considered unimportant shreds of the chicken genome, are gene-
rich elements with a high GC content and few transposable elements. Their origin has been …

[HTML][HTML] Discovery and population genomics of structural variation in a songbird genus

MH Weissensteiner, I Bunikis, A Catalán… - Nature …, 2020 - nature.com
Structural variation (SV) constitutes an important type of genetic mutations providing the raw
material for evolution. Here, we uncover the genome-wide spectrum of intra-and interspecific …

Bat biology, genomes, and the Bat1K project: to generate chromosome-level genomes for all living bat species

EC Teeling, SC Vernes, LM Dávalos… - Annual review of …, 2018 - annualreviews.org
Bats are unique among mammals, possessing some of the rarest mammalian adaptations,
including true self-powered flight, laryngeal echolocation, exceptional longevity, unique …

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise

V Peona, MPK Blom, L Xu, R Burri… - Molecular ecology …, 2021 - Wiley Online Library
Genome assemblies are currently being produced at an impressive rate by consortia and
individual laboratories. The low costs and increasing efficiency of sequencing technologies …

[HTML][HTML] Immune genes are hotspots of shared positive selection across birds and mammals

AJ Shultz, TB Sackton - Elife, 2019 - elifesciences.org
Consistent patterns of positive selection in functionally similar genes can suggest a common
selective pressure across a group of species. We use alignments of orthologous protein …

[HTML][HTML] Transposable elements in Drosophila

V Mérel, M Boulesteix, M Fablet, C Vieira - Mobile DNA, 2020 - Springer
Drosophila has been studied as a biological model for many years and many discoveries in
biology rely on this species. Research on transposable elements (TEs) is not an exception …

How complete are “complete” genome assemblies?—An avian perspective

V Peona, MH Weissensteiner, A Suh - 2018 - Wiley Online Library
The genomics revolution has led to the sequencing of a large variety of nonmodel
organisms often referred to as “whole” or “complete” genome assemblies. But how complete …

A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'sexomics'

M Stöck, L Kratochvíl, H Kuhl… - … of the Royal …, 2021 - royalsocietypublishing.org
Triggers and biological processes controlling male or female gonadal differentiation vary in
vertebrates, with sex determination (SD) governed by environmental factors or simple to …