Investigation of membrane fouling phenomenon using molecular dynamics simulations: A review

Y Ma, JW Chew - Journal of Membrane Science, 2022 - Elsevier
Membrane fouling remains a tremendous obstacle in the implementation of membrane
technology, which has motivated the use of a wide range of experimental techniques to …

Data science in chemical engineering: applications to molecular science

C Ashraf, N Joshi, DAC Beck… - Annual Review of …, 2021 - annualreviews.org
Chemical engineering is being rapidly transformed by the tools of data science. On the
horizon, artificial intelligence (AI) applications will impact a huge swath of our work, ranging …

Py-MCMD: python software for performing hybrid Monte Carlo/molecular dynamics simulations with GOMC and NAMD

MS Barhaghi, B Crawford, G Schwing… - Journal of chemical …, 2022 - ACS Publications
py-MCMD, an open-source Python software, provides a robust workflow layer that manages
communication of relevant system information between the simulation engines NAMD and …

Data scheme and data format for transferable force fields for molecular simulation

G Kanagalingam, S Schmitt, F Fleckenstein, S Stephan - Scientific Data, 2023 - nature.com
A generalized data scheme for transferable classical force fields used in molecular
simulations, ie molecular dynamics and Monte Carlo simulation, is presented. The data …

LUNAR: automated input generation and analysis for reactive LAMMPS simulations

J Kemppainen, JR Gissinger, S Gowtham… - Journal of chemical …, 2024 - ACS Publications
Generating simulation-ready molecular models for the LAMMPS molecular dynamics (MD)
simulation software package is a difficult task and impedes the more widespread and …

Systematic optimization of a fragment-based force field against experimental pure-liquid properties considering large compound families: Application to saturated …

MP Oliveira, M Andrey, SR Rieder, L Kern… - Journal of chemical …, 2020 - ACS Publications
Direct optimization against experimental condensed-phase properties concerning small
organic molecules still represents the most reliable way to calibrate the empirical …

[PDF][PDF] Open‐source molecular modeling software in chemical engineering focusing on the Molecular Simulation Design Framework

PT Cummings, CR Iacovella, A Ledeczi, E Jankowski… - 2021 - deepblue.lib.umich.edu
1. Background Molecular simulation has emerged as an important sub-field of chemical
engineering, due in no small part to the leadership of Keith Gubbins. A characteristic of the …

Do Specific Ion Effects on Collective Relaxation Arise from Perturbation of Hydrogen-Bonding Network Structure?

JA Clark, JF Douglas - The Journal of Physical Chemistry B, 2024 - ACS Publications
The change in the transport properties (ie, water diffusivity, shear viscosity, etc.) when
adding salts to water has been used to classify ions as either being chaotropic or …

Critical Role of Anion–Solvent Interactions for Dynamics of Solvent-in-Salt Solutions

I Popov, RL Sacci, NC Sanders… - The Journal of …, 2020 - ACS Publications
Most polar solvent molecules are unstable toward electrode materials used in Li-based
batteries. Solid electrolytes and ionic liquids are far more stable; however, they have …

MoSDeF, a python framework enabling large-scale computational screening of soft matter: Application to chemistry-property relationships in lubricating monolayer …

AZ Summers, JB Gilmer, CR Iacovella… - Journal of Chemical …, 2020 - ACS Publications
We demonstrate how the recently developed Python-based Molecular Simulation and
Design Framework (MoSDeF) can be used to perform molecular dynamics screening of …