Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

TG Frøslev, R Kjøller, HH Bruun, R Ejrnæs… - Nature …, 2017 - nature.com
DNA metabarcoding is promising for cost-effective biodiversity monitoring, but reliable
diversity estimates are difficult to achieve and validate. Here we present and validate a …

Microbial dynamics of elevated carbon flux in the open ocean's abyss

KE Poff, AO Leu, JM Eppley, DM Karl… - Proceedings of the …, 2021 - National Acad Sciences
In the open ocean, elevated carbon flux (ECF) events increase the delivery of particulate
carbon from surface waters to the seafloor by severalfold compared to other times of year …

The response of the soil bacterial community and function to forest succession caused by forest disease

ZL Qu, B Liu, Y Ma, J Xu, H Sun - Functional Ecology, 2020 - Wiley Online Library
Forest succession is a key driver of plant communities and understanding succession is
central to forest restoration. Currently, the information on the response of the microbial …

From metabarcoding to metaphylogeography: separating the wheat from the chaff

X Turon, A Antich, C Palacín, K Præbel… - Ecological …, 2020 - Wiley Online Library
Metabarcoding is by now a well‐established method for biodiversity assessment in
terrestrial, freshwater, and marine environments. Metabarcoding data sets are usually used …

Fungal diversity and dynamics during long-term immersion of conventional and biodegradable plastics in the marine environment

A Philippe, C Noël, B Eyheraguibel, JF Briand… - Diversity, 2023 - mdpi.com
Plastics are associated with a worldwide pollution crisis, with strong negative impacts on
both terrestrial and aquatic ecosystems. In marine environments, various organisms are …

The Inuit gut microbiome is dynamic over time and shaped by traditional foods

G Dubois, C Girard, FJ Lapointe, BJ Shapiro - Microbiome, 2017 - Springer
Background The human gut microbiome represents a diverse microbial community that
varies across individuals and populations, and is influenced by factors such as host genetics …

Comparative analysis of fecal microbiomes from wild waterbirds to poultry, cattle, pigs, and wastewater treatment plants for a microbial source tracking approach

AM Boukerb, C Noël, E Quenot, B Cadiou… - Frontiers in …, 2021 - frontiersin.org
Fecal pollution in coastal areas is of a high concern since it affects bathing and shellfish
harvesting activities. Wild waterbirds are non-negligible in the overall signal of the …

Free-living and particle-attached bacterial community composition, assembly processes and determinants across spatiotemporal scales in a macrotidal temperate …

M Urvoy, M Gourmelon, J Serghine, E Rabiller… - Scientific Reports, 2022 - nature.com
Bacteria play an important role in biogeochemical cycles as they transform and remineralize
organic matter. Particles are notable hotspots of activity, hosting particle-attached (PA) …

Sharing Vitamin B12 between Bacteria and Microalgae Does Not Systematically Occur: Case Study of the Haptophyte Tisochrysis lutea

C Nef, S Dittami, R Kaas, E Briand, C Noël, F Mairet… - Microorganisms, 2022 - mdpi.com
Haptophyte microalgae are key contributors to microbial communities in many
environments. It has been proposed recently that members of this group would be virtually …

Relevance of plant and fungal DNA metabarcoding in aerobiology

E Banchi, A Pallavicini, L Muggia - Aerobiologia, 2020 - Springer
Aerobiology studies biological particles present in the air of both indoor and outdoor
environments. In the past few years, the application of molecular techniques has …