Textual data compression in computational biology: a synopsis

R Giancarlo, D Scaturro, F Utro - Bioinformatics, 2009 - academic.oup.com
Motivation: Textual data compression, and the associated techniques coming from
information theory, are often perceived as being of interest for data communication and …

Quantifying hidden order out of equilibrium

S Martiniani, PM Chaikin, D Levine - Physical Review X, 2019 - APS
While the equilibrium properties, states, and phase transitions of interacting systems are well
described by statistical mechanics, the lack of suitable state parameters has hindered the …

Entropic approach to the detection of crucial events

G Culbreth, BJ West, P Grigolini - Entropy, 2019 - mdpi.com
In this paper, we establish a clear distinction between two processes yielding anomalous
diffusion and 1/f noise. The first process is called Stationary Fractional Brownian Motion …

Effective symbolic dynamics, random points, statistical behavior, complexity and entropy

S Galatolo, M Hoyrup, C Rojas - Information and Computation, 2010 - Elsevier
We consider the dynamical behavior of Martin-Löf random points in dynamical systems over
metric spaces with a computable dynamics and a computable invariant measure. We use …

Textual data compression in computational biology: Algorithmic techniques

R Giancarlo, D Scaturro, F Utro - Computer Science Review, 2012 - Elsevier
In a recent review [R. Giancarlo, D. Scaturro, F. Utro, Textual data compression in
computational biology: a synopsis, Bioinformatics 25 (2009) 1575–1586] the first systematic …

Information density, structure and entropy in equilibrium and non-equilibrium systems

M Zu, A Bupathy, D Frenkel… - Journal of Statistical …, 2020 - iopscience.iop.org
During a spontaneous change, a macroscopic physical system will evolve towards a macro-
state with more realizations. This observation is at the basis of the statistical mechanical …

[PDF][PDF] Data-compression approach to authorship attribution

M Lalli, F Tria, V Loreto - Elena Ferrante: A Virtual Author, 2018 - core.ac.uk
Authorship attribution is a fascinating field at the crossroad between linguistics and
information science. Its relevance goes much beyond the specific predictions that different …

Algorithmic information dynamics of emergent, persistent, and colliding particles in the game of life

H Zenil, NA Kiani, J Tegnér - From Parallel to Emergent …, 2019 - taylorfrancis.com
Algorithmic probability is a seminal concept in the theory of algorithmic information. The
concept of algorithmic information dynamics or simply algorithmic dynamics was introduced …

Complex temporal patterns in molecular dynamics: A direct measure of the phase-space exploration by the trajectory at macroscopic time scales

D Nerukh, V Ryabov, RC Glen - Physical Review E—Statistical, Nonlinear, and …, 2008 - APS
Computer simulated trajectories of bulk water molecules form complex spatiotemporal
structures at the picosecond time scale. This intrinsic complexity, which underlies the …

The Lempel-Ziv complexity of non-stationary chaos in infinite ergodic cases

S Shinkai, Y Aizawa - Progress of theoretical physics, 2006 - academic.oup.com
The large deviation properties of the Lempel-Ziv complexity are studied using a one-
dimensional non-hyperbolic chaos map called the “modified Bernoulli map”, where the …