[HTML][HTML] Networks beyond pairwise interactions: Structure and dynamics

F Battiston, G Cencetti, I Iacopini, V Latora, M Lucas… - Physics reports, 2020 - Elsevier
The complexity of many biological, social and technological systems stems from the richness
of the interactions among their units. Over the past decades, a variety of complex systems …

The structure of ecological networks across levels of organization

PR Guimaraes Jr - Annual Review of Ecology, Evolution, and …, 2020 - annualreviews.org
Interactions connect the units of ecological systems, forming networks. Individual-based
networks characterize variation in niches among individuals within populations. These …

Multistep diversification in spatiotemporal bacterial-phage coevolution

E Shaer Tamar, R Kishony - Nature Communications, 2022 - nature.com
The evolutionary arms race between phages and bacteria, where bacteria evolve resistance
to phages and phages retaliate with resistance-countering mutations, is a major driving force …

Rapid bacteria-phage coevolution drives the emergence of multiscale networks

JM Borin, JJ Lee, A Lucia-Sanz, KR Gerbino, JS Weitz… - Science, 2023 - science.org
Interactions between species catalyze the evolution of multiscale ecological networks,
including both nested and modular elements that regulate the function of diverse …

[PDF][PDF] Higher-order structures of local collaboration networks are associated with individual scientific productivity

W Yang, Y Wang - EPJ Data Science, 2024 - Springer
The prevalence of teamwork in contemporary science has raised new questions about
collaboration networks and the potential impact on research outcomes. Previous studies …

Long-term monitoring of aphid-transmitted viruses in melon and zucchini crops: Genetic diversity and population structure of cucurbit aphid-borne yellows virus and …

MP Rabadán, M Juárez, P Gómez - Phytopathology®, 2023 - Am Phytopath Society
Understanding the emergence and prevalence of viral diseases in crops requires the
systematic epidemiological monitoring of viruses, as well as the analysis of how ecological …

Metagenomics show high spatiotemporal virus diversity and ecological compartmentalisation: Virus infections of melon, Cucumis melo, crops, and adjacent wild …

MJ McLeish, AD Zamfir, BM Babalola, A Peláez… - Virus …, 2022 - academic.oup.com
The emergence of viral diseases results from novel transmission dynamics between wild
and crop plant communities. The bias of studies towards pathogenic viruses of crops has …

Metagenomics reveals the structure of Mastrevirus–host interaction network within an agro-ecosystem

S Claverie, M Hoareau, SB Chéhida, D Filloux… - Virus …, 2023 - academic.oup.com
As highly pervasive parasites that sometimes cause disease, viruses are likely major
components of all natural ecosystems. An important step towards both understanding the …

Population genomics of plant viruses: the ecology and evolution of virus emergence

MJ McLeish, A Fraile, F García-Arenal - Phytopathology®, 2021 - Am Phytopath Society
The genomics era has revolutionized studies of adaptive evolution by monitoring large
numbers of loci throughout the genomes of many individuals. Ideally, the investigation of …

Assessment of the current status of potyviruses in watermelon and pumpkin crops in Spain: Epidemiological impact of cultivated plants and mixed infections

C De Moya-Ruiz, P Rabadán, M Juárez, P Gómez - Plants, 2021 - mdpi.com
Viral infections on cucurbit plants cause substantial quality and yield losses on their crops.
The diseased plants can often be infected by multiple viruses, and their epidemiology may …