Applicability and interpretability of Ward's hierarchical agglomerative clustering with or without contiguity constraints

N Randriamihamison, N Vialaneix, P Neuvial - Journal of Classification, 2021 - Springer
Hierarchical agglomerative clustering (HAC) with Ward's linkage has been widely used
since its introduction by Ward (Journal of the American Statistical Association, 58 (301), 236 …

Population genomics meets the taxonomy of cyanobacteria

P Dvořák, E Jahodářová, A Stanojković, S Skoupý… - Algal Research, 2023 - Elsevier
The emergence of cyanobacterial species (speciation) is driven by mutation, selection, gene
flow, and geographical and ecological isolation. Population genomics explores the process …

[HTML][HTML] Genomic prediction accuracy using haplotypes defined by size and hierarchical clustering based on linkage disequilibrium

S Won, JE Park, JH Son, SH Lee, BH Park… - Frontiers in …, 2020 - frontiersin.org
Genomic prediction is an effective way to estimate the genomic breeding values from
genetic information based on statistical methods such as best linear unbiased prediction …

Large-scale name disambiguation of Chinese patent inventors (1985–2016)

D Yin, K Motohashi, J Dang - Scientometrics, 2020 - Springer
This study presents the first systematic disambiguation result of Chinese patent inventors in
State Intellectual Property Office of China patent database from 1985 to 2016. With a list of …

Contributions to statistical inference from genomic data

P Neuvial - 2020 - theses.hal.science
This thesis summarizes my research contributions to the development, mathematical study,
and application of statistical models and methods that take advantage of the complexity and …

Structured Compression of Genetic Information and Genome‐Wide Association Study by Additive Models

F GUINOT, M SZAFRANSKI… - … Computer and Statistical …, 2024 - Wiley Online Library
In this chapter, the authors look into the context of genome‐wide association studies and the
reference tools used to detect associations between a genotype and a phenotype. They …

[HTML][HTML] Haplotype analysis of genomic prediction by incorporating genomic pathway information based on high-density SNP marker in Chinese yellow-feathered …

H Ye, Z Xu, SF Bello, Q Zhu, S Kong, M Zheng, X Fang… - Poultry Science, 2023 - Elsevier
Genomic selection using single nucleotide polymorphism (SNP) markers is now intensively
investigated in breeding and has been widely utilized for genetic improvement. Currently …

[PDF][PDF] Classification ascendante hiérarchique, contrainte d'ordre: conditions d'applicabilité, interprétabilité des dendrogrammes

N Randriamihamison, P Neuvial… - Institut de …, 2019 - sombrero.nathalievialaneix.eu
Résumé La classification ascendante hiérarchique (CAH) avec lien de Ward est une
approche fréquemment utilisée pour partitionner des objets d'un espace multi-dimensionnel …

Classification Ascendante Hiérarchique sous Contrainte de Contiguïté pour l'Analyse de données Hi-C

N Randriamihamison - 2021 - theses.hal.science
L'organisation spatiale du génome à l'intérieur du noyau des cellules a un impact majeur sur
la régulation de l'expression des gènes, avec notamment des implications importantes dans …

[PDF][PDF] Package 'adjclust'

C Ambroise, S Chaturvedi, A Dehman, P Neuvial… - 2020 - download.nust.na
Description Implements a constrained version of hierarchical agglomerative clustering, in
which each observation is associated to a position, and only adjacent clusters can be …