Recent developments in free energy calculations for drug discovery
The grand challenge in structure-based drug design is achieving accurate prediction of
binding free energies. Molecular dynamics (MD) simulations enable modeling of …
binding free energies. Molecular dynamics (MD) simulations enable modeling of …
Parkinson's: a disease of aberrant vesicle trafficking
PK Singh, MMK Muqit - Annual review of cell and …, 2020 - annualreviews.org
Parkinson's disease (PD) is a leading cause of neurodegeneration that is defined by the
selective loss of dopaminergic neurons and the accumulation of protein aggregates called …
selective loss of dopaminergic neurons and the accumulation of protein aggregates called …
PINK1-dependent phosphorylation of Serine111 within the SF3 motif of Rab GTPases impairs effector interactions and LRRK2-mediated phosphorylation at …
S Vieweg, K Mulholland, B Bräuning… - Biochemical …, 2020 - portlandpress.com
Loss of function mutations in the PTEN-induced kinase 1 (PINK1) kinase are causal for
autosomal recessive Parkinson's disease (PD) whilst gain of function mutations in the …
autosomal recessive Parkinson's disease (PD) whilst gain of function mutations in the …
Dysfunction of RAB39B‐mediated vesicular trafficking in Lewy Body diseases
DJ Koss, S Campesan, F Giorgini… - Movement …, 2021 - Wiley Online Library
Intracellular vesicular trafficking is essential for neuronal development, function, and
homeostasis and serves to process, direct, and sort proteins, lipids, and other cargo …
homeostasis and serves to process, direct, and sort proteins, lipids, and other cargo …
A phosphosite mutant approach on LRRK2 links phosphorylation and dephosphorylation to protective and deleterious markers, respectively
A Marchand, A Sarchione, PS Athanasopoulos… - Cells, 2022 - mdpi.com
The Leucine Rich Repeat Kinase 2 (LRRK2) gene is a major genetic determinant of
Parkinson's disease (PD), encoding a homonymous multi-domain protein with two catalytic …
Parkinson's disease (PD), encoding a homonymous multi-domain protein with two catalytic …
Dual arginine recognition of LRRK2 phosphorylated Rab GTPases
D Waschbüsch, E Purlyte, AR Khan - Biophysical journal, 2021 - cell.com
Parkinson's-disease-associated LRRK2 is a multidomain Ser/Thr kinase that phosphorylates
a subset of Rab GTPases to control their effector functions. Rab GTPases are the prime …
a subset of Rab GTPases to control their effector functions. Rab GTPases are the prime …
Endogenous LRRK2 and PINK1 function in a convergent neuroprotective ciliogenesis pathway in the brain
Mutations in LRRK2 and PINK1 are associated with familial Parkinson's disease (PD).
LRRK2 phosphorylates Rab GTPases within the Switch II domain whilst PINK1 directly …
LRRK2 phosphorylates Rab GTPases within the Switch II domain whilst PINK1 directly …
Modeling of Protein Assemblies Through Global Docking and Accelerated Molecular Dynamics Simulation
D Pourjafar-Dehkordi - 2022 - mediatum.ub.tum.de
Understanding the structure of protein assemblies plays a pivotal role in discovering their
function. The focus of this work is on the application of MD simulations in the structural …
function. The focus of this work is on the application of MD simulations in the structural …
Exploring phenotypes of LRRK2 phosphorylation using a phosphosite mutation approach
A Marchand - 2021 - theses.hal.science
Parkinson's disease (PD) is the most common neurodegenerative motor disease. Mutations
in the leucine rich repeat kinase 2 (LRRK2) gene are linked to autosomal dominant …
in the leucine rich repeat kinase 2 (LRRK2) gene are linked to autosomal dominant …
Influence of a Ser111‐phosphorylation on Rab1b GTPase conformational dynamics studied by advanced sampling simulations
D Pourjafar‐Dehkordi… - … : Structure, Function, and …, 2021 - Wiley Online Library
Rab GTPases constitute the largest branch of the Ras protein superfamily that regulate intra‐
cellular membrane trafficking. Their signaling activity is mediated by the transition between …
cellular membrane trafficking. Their signaling activity is mediated by the transition between …