Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

Demography and its effects on genomic variation in crop domestication

BS Gaut, DK Seymour, Q Liu, Y Zhou - Nature plants, 2018 - nature.com
Over two thousand plant species have been modified morphologically through cultivation
and human use. Here, we review three aspects of crop domestication that are currently …

[HTML][HTML] Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

PGDD: a database of gene and genome duplication in plants

TH Lee, H Tang, X Wang, AH Paterson - Nucleic acids research, 2012 - academic.oup.com
Genome duplication (GD) has permanently shaped the architecture and function of many
higher eukaryotic genomes. The angiosperms (flowering plants) are outstanding models in …

The fate of duplicated genes in a polyploid plant genome

A Roulin, PL Auer, M Libault, J Schlueter… - The Plant …, 2013 - Wiley Online Library
Polyploidy is generally not tolerated in animals, but is widespread in plant genomes and
may result in extensive genetic redundancy. The fate of duplicated genes is poorly …

Haplotype‐resolved genome assembly of Bletilla striata (Thunb.) Reichb.f. to elucidate medicinal value

L Jiang, M Lin, H Wang, H Song, L Zhang… - The Plant …, 2022 - Wiley Online Library
Bletilla striata, commonly known as baiji, is a species used in traditional Chinese medicine; it
is highly regarded for its medicinal applications and therefore has high economic value …

Gene duplication as a driver of plant morphogenetic evolution

SA Rensing - Current opinion in plant biology, 2014 - Elsevier
Highlights•Whole genome duplications are an important mode of plant evolution.•Plants
evolve developmental novelties by retention of duplicated control genes.•Genes controlling …

[HTML][HTML] Dosage compensation can buffer copy-number variation in wild yeast

J Hose, CM Yong, M Sardi, Z Wang, MA Newton… - Elife, 2015 - elifesciences.org
Aneuploidy is linked to myriad diseases but also facilitates organismal evolution. It remains
unclear how cells overcome the deleterious effects of aneuploidy until new phenotypes …

Genome‐wide analysis of the lignin toolbox of Eucalyptus grandis

V Carocha, M Soler, C Hefer, H Cassan‐Wang… - New …, 2015 - Wiley Online Library
Lignin, a major component of secondary cell walls, hinders the optimal processing of wood
for industrial uses. The recent availability of the E ucalyptus grandis genome sequence …

[HTML][HTML] Asymmetric epigenome maps of subgenomes reveal imbalanced transcription and distinct evolutionary trends in Brassica napus

Q Zhang, P Guan, L Zhao, M Ma, L Xie, Y Li, R Zheng… - Molecular Plant, 2021 - cell.com
The complexity of the epigenome landscape and transcriptional regulation is significantly
increased during plant polyploidization, which drives genome evolution and contributes to …