Sequencing-based analysis of microbiomes
Microbiomes occupy a range of niches and, in addition to having diverse compositions, they
have varied functional roles that have an impact on agriculture, environmental sciences, and …
have varied functional roles that have an impact on agriculture, environmental sciences, and …
[HTML][HTML] Hierarchical eco-evo dynamics mediated by the gut microbiome
The concept of eco-evolutionary (eco-evo) dynamics, stating that ecological and
evolutionary processes occur at similar time scales and influence each other, has …
evolutionary processes occur at similar time scales and influence each other, has …
Microbial-derived tryptophan metabolites and their role in neurological disease: anthranilic acid and anthranilic acid derivatives
The gut microbiome provides the host access to otherwise indigestible nutrients, which are
often further metabolized by the microbiome into bioactive components. The gut microbiome …
often further metabolized by the microbiome into bioactive components. The gut microbiome …
Eco-evolutionary feedbacks in the human gut microbiome
BH Good, LB Rosenfeld - Nature Communications, 2023 - nature.com
Gut microbiota can evolve within their hosts on human-relevant timescales, but little is
known about how these changes influence (or are influenced by) the composition of their …
known about how these changes influence (or are influenced by) the composition of their …
Predicting the first steps of evolution in randomly assembled communities
J McEnany, BH Good - Nature Communications, 2024 - nature.com
Microbial communities can self-assemble into highly diverse states with predictable
statistical properties. However, these initial states can be disrupted by rapid evolution of the …
statistical properties. However, these initial states can be disrupted by rapid evolution of the …
The costs and benefits of a dynamic host microbiome
MAF Gillingham, H Prüter, BK Montero… - Trends in Ecology & …, 2024 - cell.com
All species host a rich community of microbes. This microbiome is dynamic, and displays
seasonal, daily, and even hourly changes, but also needs to be resilient to fulfill important …
seasonal, daily, and even hourly changes, but also needs to be resilient to fulfill important …
Investigating macroecological patterns in coarse-grained microbial communities using the stochastic logistic model of growth
WR Shoemaker, J Grilli - Elife, 2024 - elifesciences.org
The structure and diversity of microbial communities are intrinsically hierarchical due to the
shared evolutionary history of their constituents. This history is typically captured through …
shared evolutionary history of their constituents. This history is typically captured through …
From wolves to humans: oral microbiome resistance to transfer across mammalian hosts
NA Podar, AA Carrell, KA Cassidy, DM Klingeman… - Mbio, 2024 - Am Soc Microbiol
The mammalian mouth is colonized by complex microbial communities, adapted to specific
niches, and in homeostasis with the host. Individual microbes interact metabolically and rely …
niches, and in homeostasis with the host. Individual microbes interact metabolically and rely …
A macroecological perspective on genetic diversity in the human gut microbiome
WR Shoemaker - PLoS One, 2023 - journals.plos.org
While the human gut microbiome has been intensely studied, we have yet to obtain a
sufficient understanding of the genetic diversity that it harbors. Research efforts have …
sufficient understanding of the genetic diversity that it harbors. Research efforts have …
Parallel evolution of alternate morphotypes of Chryseobacterium gleum during experimental evolution with Caenorhabditis elegans
M Duckett, MN Taylor, C Bowman… - FEMS Microbiology …, 2024 - academic.oup.com
Microbial evolution within polymicrobial communities is a complex process. Here, we report
within-species diversification within multispecies microbial communities during experimental …
within-species diversification within multispecies microbial communities during experimental …