Computational approach to molecular catalysis by 3d transition metals: challenges and opportunities

KD Vogiatzis, MV Polynski, JK Kirkland… - Chemical …, 2018 - ACS Publications
Computational chemistry provides a versatile toolbox for studying mechanistic details of
catalytic reactions and holds promise to deliver practical strategies to enable the rational in …

Carrier-based ion-selective electrodes and bulk optodes. 1. General characteristics

E Bakker, P Bühlmann, E Pretsch - Chemical reviews, 1997 - ACS Publications
Over the past 30 years, the application of carrierbased ion-selective electrodes (ISEs) has
evolved to a well-established routine analytical technique. The College of American …

Tinker 8: software tools for molecular design

JA Rackers, Z Wang, C Lu, ML Laury… - Journal of chemical …, 2018 - ACS Publications
The Tinker software, currently released as version 8, is a modular molecular mechanics and
dynamics package written primarily in a standard, easily portable dialect of Fortran 95 with …

Predicting molecular conformation via dynamic graph score matching

S Luo, C Shi, M Xu, J Tang - Advances in Neural …, 2021 - proceedings.neurips.cc
Predicting stable 3D conformations from 2D molecular graphs has been a long-standing
challenge in computational chemistry. Recently, machine learning approaches have …

Geomol: Torsional geometric generation of molecular 3d conformer ensembles

O Ganea, L Pattanaik, C Coley… - Advances in …, 2021 - proceedings.neurips.cc
Prediction of a molecule's 3D conformer ensemble from the molecular graph holds a key
role in areas of cheminformatics and drug discovery. Existing generative models have …

Learning neural generative dynamics for molecular conformation generation

M Xu, S Luo, Y Bengio, J Peng, J Tang - arXiv preprint arXiv:2102.10240, 2021 - arxiv.org
We study how to generate molecule conformations (ie, 3D structures) from a molecular
graph. Traditional methods, such as molecular dynamics, sample conformations via …

[图书][B] Chemical graph theory

N Trinajstic - 2018 - taylorfrancis.com
New Edition! Completely Revised and UpdatedChemical Graph Theory, 2nd Edition is a
completely revised and updated edition of a highly regarded book that has been widely …

An end-to-end framework for molecular conformation generation via bilevel programming

M Xu, W Wang, S Luo, C Shi, Y Bengio… - International …, 2021 - proceedings.mlr.press
Predicting molecular conformations (or 3D structures) from molecular graphs is a
fundamental problem in many applications. Most existing approaches are usually divided …

Euclidean distance geometry and applications

L Liberti, C Lavor, N Maculan, A Mucherino - SIAM review, 2014 - SIAM
Euclidean distance geometry is the study of Euclidean geometry based on the concept of
distance. This is useful in several applications where the input data consist of an incomplete …

Solving the multiple instance problem with axis-parallel rectangles

TG Dietterich, RH Lathrop, T Lozano-Pérez - Artificial intelligence, 1997 - Elsevier
The multiple instance problem arises in tasks where the training examples are ambiguous: a
single example object may have many alternative feature vectors (instances) that describe it …