(Differential) co-expression analysis of gene expression: a survey of best practices

HA Chowdhury, DK Bhattacharyya… - IEEE/ACM transactions …, 2019 - ieeexplore.ieee.org
Analysis of gene expression data is widely used in transcriptomic studies to understand
functions of molecules inside a cell and interactions among molecules. Differential co …

Epigenetic arginine methylation in breast cancer: emerging therapeutic strategies

SCM Wang, DH Dowhan… - Journal of molecular …, 2019 - jme.bioscientifica.com
Breast cancer is a heterogeneous disease, and the complexity of breast carcinogenesis is
associated with epigenetic modification. There are several major classes of epigenetic …

Identification of profiles of volatile organic compounds in exhaled breath by means of an electronic nose as a proposal for a screening method for breast cancer: A …

LD de Leon-Martínez… - Journal of breath …, 2020 - iopscience.iop.org
The objective of the present study was to identify volatile prints from exhaled breath, termed
breath-print, from breast cancer (BC) patients and healthy women by means of an electronic …

Nine-gene signature and nomogram for predicting survival in patients with head and neck squamous cell carcinoma

F Yang, L Zhou, H Yang, Y Wang - Frontiers in Genetics, 2022 - frontiersin.org
Background: Head and neck squamous cell carcinomas (HNSCCs) are derived from the
mucosal linings of the upper aerodigestive tract, salivary glands, thyroid, oropharynx, larynx …

Discovery and characterization of functional modules associated with body weight in broilers

E Tarsani, A Kranis, G Maniatis, S Avendano… - Scientific reports, 2019 - nature.com
Aim of the present study was to investigate whether body weight (BW) in broilers is
associated with functional modular genes. To this end, first a GWAS for BW was conducted …

WDR5 promotes the tumorigenesis of oral squamous cell carcinoma via CARM1/β-catenin axis

XY Lyu, YS Shui, L Wang, QS Jiang, LX Meng… - Odontology, 2022 - Springer
Oral squamous cell carcinoma (OSCC) is a malignancy all over the world. WD repeat
domain 5 (WDR5) is involved in cancer progression. In addition, it was reported that WDR5 …

Network medicine-based analysis of association between gynecological cancers and metabolic and hormonal disorders

AL Salaudeen, S Banerjee - Applied Biochemistry and Biotechnology, 2022 - Springer
Different metabolic and hormonal disorders like type 2 diabetes mellitus (T2DM), obesity,
and polycystic ovary syndrome (PCOS) have tangible socio-economic impact. Prevalence of …

ClusterMine: A knowledge-integrated clustering approach based on expression profiles of gene sets

HD Li, Y Xu, X Zhu, Q Liu, GS Omenn… - Journal of bioinformatics …, 2020 - World Scientific
Clustering analysis of gene expression data is essential for understanding complex
biological data, and is widely used in important biological applications such as the …

Machine learning characterization of a novel panel for metastatic prediction in breast cancer

M Ağraz, U Ağyüz, EC Welch, B Kuyumcu… - Global Journal of …, 2022 - clinsurggroup.us
Metastasis is one of the most challenging problems in cancer diagnosis and treatment, as
causal factors have yet to be fully disentangled. Prediction of the metastatic status of breast …

Nuclear receptors and coactivators

DM Lonard, B O'Malley - Genetic Steroid Disorders, 2023 - Elsevier
Nuclear receptors depend upon coactivator proteins to accomplish their roles as
transcription factors that can drive hormone-dependent gene expression. Hundreds of …